A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1138.3
nTPM
Monaco:
86.6
nTPM
Schmiedel:
340.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1138.3
HPA sample
nTPM
Memory B-cell nTPM: 1138.3
Samples: 6
Max nTPM: 1350.5
Min nTPM: 649.5
P10809_1017
1202.8
P10809_1025
1286.6
P10809_1044
649.5
P10809_1063
1218.1
P10809_1092
1122.3
P10809_1105
1350.5
Naive B-cell nTPM: 1034.1
Samples: 6
Max nTPM: 1333.3
Min nTPM: 624.6
P10809_1011
948.6
P10809_1029
1039.2
P10809_1048
624.6
P10809_1067
1201.7
P10809_1091
1057.2
P10809_1104
1333.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 82.2
Samples: 4
Max nTPM: 140.8
Min nTPM: 35.4
RHH5310_R3677
59.4
RHH5218_R3590
35.4
RHH5247_R3619
93.1
RHH5276_R3648
140.8
Naive B-cell nTPM: 86.6
Samples: 4
Max nTPM: 175.2
Min nTPM: 31.5
RHH5308_R3675
72.0
RHH5216_R3588
31.5
RHH5245_R3617
175.2
RHH5274_R3646
67.7
Non-switched memory B-cell nTPM: 58.4
Samples: 4
Max nTPM: 118.0
Min nTPM: 16.3
RHH5309_R3676
68.2
RHH5217_R3589
31.1
RHH5246_R3618
16.3
RHH5275_R3647
118.0
Plasmablast nTPM: 44.2
Samples: 4
Max nTPM: 61.4
Min nTPM: 14.0
RHH5312_R3679
61.4
RHH5220_R3592
14.0
RHH5249_R3621
42.0
RHH5278_R3650
59.2
Switched memory B-cell nTPM: 57.0
Samples: 4
Max nTPM: 101.4
Min nTPM: 38.5
RHH5311_R3678
38.5
RHH5219_R3591
39.6
RHH5248_R3620
48.6
RHH5277_R3649
101.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
340.4
Schmiedel sample id
TPM
Naive B-cell TPM: 340.4
Samples: 91
Max TPM: 449.4
Min TPM: 174.6
B_CELL_NAIVE_1
449.4
B_CELL_NAIVE_2
419.8
B_CELL_NAIVE_3
414.0
B_CELL_NAIVE_4
410.5
B_CELL_NAIVE_5
406.4
B_CELL_NAIVE_6
399.0
B_CELL_NAIVE_7
398.0
B_CELL_NAIVE_8
397.3
B_CELL_NAIVE_9
396.6
B_CELL_NAIVE_10
396.2
B_CELL_NAIVE_11
396.0
B_CELL_NAIVE_12
390.1
B_CELL_NAIVE_13
389.7
B_CELL_NAIVE_14
388.2
B_CELL_NAIVE_15
387.0
B_CELL_NAIVE_16
384.9
B_CELL_NAIVE_17
384.3
B_CELL_NAIVE_18
384.2
B_CELL_NAIVE_19
383.5
B_CELL_NAIVE_20
383.0
B_CELL_NAIVE_21
381.7
B_CELL_NAIVE_22
381.1
B_CELL_NAIVE_23
379.4
B_CELL_NAIVE_24
376.8
B_CELL_NAIVE_25
376.3
B_CELL_NAIVE_26
375.7
B_CELL_NAIVE_27
372.3
B_CELL_NAIVE_28
372.1
B_CELL_NAIVE_29
370.4
B_CELL_NAIVE_30
370.2
B_CELL_NAIVE_31
369.6
B_CELL_NAIVE_32
369.0
B_CELL_NAIVE_33
365.7
B_CELL_NAIVE_34
364.3
B_CELL_NAIVE_35
363.2
B_CELL_NAIVE_36
363.2
B_CELL_NAIVE_37
362.4
B_CELL_NAIVE_38
360.4
B_CELL_NAIVE_39
355.1
B_CELL_NAIVE_40
354.2
B_CELL_NAIVE_41
354.0
B_CELL_NAIVE_42
350.3
B_CELL_NAIVE_43
349.7
B_CELL_NAIVE_44
346.6
B_CELL_NAIVE_45
345.6
B_CELL_NAIVE_46
344.7
B_CELL_NAIVE_47
344.3
B_CELL_NAIVE_48
343.6
B_CELL_NAIVE_49
342.8
B_CELL_NAIVE_50
340.5
B_CELL_NAIVE_51
339.7
B_CELL_NAIVE_52
339.0
B_CELL_NAIVE_53
338.3
B_CELL_NAIVE_54
338.3
B_CELL_NAIVE_55
336.9
B_CELL_NAIVE_56
336.7
B_CELL_NAIVE_57
336.3
B_CELL_NAIVE_58
335.3
B_CELL_NAIVE_59
335.3
B_CELL_NAIVE_60
334.3
B_CELL_NAIVE_61
333.1
B_CELL_NAIVE_62
333.0
B_CELL_NAIVE_63
331.5
B_CELL_NAIVE_64
329.9
B_CELL_NAIVE_65
327.6
B_CELL_NAIVE_66
324.3
B_CELL_NAIVE_67
322.6
B_CELL_NAIVE_68
321.4
B_CELL_NAIVE_69
320.6
B_CELL_NAIVE_70
320.0
B_CELL_NAIVE_71
317.1
B_CELL_NAIVE_72
310.0
B_CELL_NAIVE_73
309.4
B_CELL_NAIVE_74
299.1
B_CELL_NAIVE_75
295.9
B_CELL_NAIVE_76
294.9
B_CELL_NAIVE_77
288.3
B_CELL_NAIVE_78
287.7
B_CELL_NAIVE_79
286.3
B_CELL_NAIVE_80
273.6
B_CELL_NAIVE_81
271.8
B_CELL_NAIVE_82
260.0
B_CELL_NAIVE_83
257.2
B_CELL_NAIVE_84
254.7
B_CELL_NAIVE_85
250.9
B_CELL_NAIVE_86
234.8
B_CELL_NAIVE_87
227.2
B_CELL_NAIVE_88
220.3
B_CELL_NAIVE_89
216.0
B_CELL_NAIVE_90
205.4
B_CELL_NAIVE_91
174.6
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