A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
539.9
nTPM
Monaco:
41.2
nTPM
Schmiedel:
233.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
539.9
HPA sample
nTPM
Classical monocyte nTPM: 539.9
Samples: 6
Max nTPM: 1106.3
Min nTPM: 290.9
P10809_1003
1106.3
P10809_1020
439.2
P10809_1039
290.9
P10809_1058
494.9
P10809_1080
353.2
P10809_1107
554.7
Intermediate monocyte nTPM: 442.6
Samples: 6
Max nTPM: 630.5
Min nTPM: 314.0
P10809_1004
372.1
P10809_1023
519.9
P10809_1042
441.2
P10809_1061
314.0
P10809_1081
377.9
P10809_1108
630.5
Non-classical monocyte nTPM: 338.5
Samples: 5
Max nTPM: 501.0
Min nTPM: 217.9
P10809_1005
392.9
P10809_1053
318.1
P10809_1072
217.9
P10809_1082
262.4
P10809_1109
501.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.2
Monaco sample
nTPM
Classical monocyte nTPM: 28.4
Samples: 4
Max nTPM: 39.0
Min nTPM: 16.0
RHH5313_R3680
36.6
RHH5221_R3593
16.0
RHH5250_R3622
22.0
RHH5279_R3651
39.0
Intermediate monocyte nTPM: 41.2
Samples: 4
Max nTPM: 52.5
Min nTPM: 30.3
RHH5314_R3681
32.2
RHH5222_R3594
49.9
RHH5251_R3623
52.5
RHH5280_R3652
30.3
Non-classical monocyte nTPM: 27.1
Samples: 4
Max nTPM: 38.7
Min nTPM: 18.0
RHH5315_R3682
33.5
RHH5223_R3595
18.0
RHH5252_R3624
38.7
RHH5281_R3653
18.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
233.3
Schmiedel sample id
TPM
Classical monocyte TPM: 233.3
Samples: 91
Max TPM: 302.4
Min TPM: 169.8
MONOCYTES_1
302.4
MONOCYTES_2
292.7
MONOCYTES_3
280.8
MONOCYTES_4
276.7
MONOCYTES_5
271.3
MONOCYTES_6
270.8
MONOCYTES_7
268.5
MONOCYTES_8
266.8
MONOCYTES_9
265.4
MONOCYTES_10
263.9
MONOCYTES_11
262.8
MONOCYTES_12
261.9
MONOCYTES_13
261.3
MONOCYTES_14
260.4
MONOCYTES_15
256.1
MONOCYTES_16
254.5
MONOCYTES_17
252.5
MONOCYTES_18
252.1
MONOCYTES_19
251.3
MONOCYTES_20
251.2
MONOCYTES_21
250.5
MONOCYTES_22
250.1
MONOCYTES_23
249.6
MONOCYTES_24
248.9
MONOCYTES_25
248.6
MONOCYTES_26
247.4
MONOCYTES_27
246.0
MONOCYTES_28
245.5
MONOCYTES_29
244.6
MONOCYTES_30
244.4
MONOCYTES_31
242.6
MONOCYTES_32
242.3
MONOCYTES_33
242.0
MONOCYTES_34
242.0
MONOCYTES_35
241.3
MONOCYTES_36
240.8
MONOCYTES_37
240.5
MONOCYTES_38
239.9
MONOCYTES_39
239.5
MONOCYTES_40
239.2
MONOCYTES_41
239.1
MONOCYTES_42
238.9
MONOCYTES_43
238.9
MONOCYTES_44
238.8
MONOCYTES_45
238.7
MONOCYTES_46
237.4
MONOCYTES_47
236.2
MONOCYTES_48
235.7
MONOCYTES_49
235.5
MONOCYTES_50
235.4
MONOCYTES_51
235.2
MONOCYTES_52
234.1
MONOCYTES_53
233.9
MONOCYTES_54
233.7
MONOCYTES_55
232.1
MONOCYTES_56
230.8
MONOCYTES_57
229.5
MONOCYTES_58
229.0
MONOCYTES_59
228.9
MONOCYTES_60
227.4
MONOCYTES_61
225.5
MONOCYTES_62
223.1
MONOCYTES_63
222.2
MONOCYTES_64
221.0
MONOCYTES_65
220.4
MONOCYTES_66
218.4
MONOCYTES_67
218.1
MONOCYTES_68
217.5
MONOCYTES_69
217.5
MONOCYTES_70
217.4
MONOCYTES_71
216.2
MONOCYTES_72
214.4
MONOCYTES_73
213.3
MONOCYTES_74
212.4
MONOCYTES_75
211.7
MONOCYTES_76
210.4
MONOCYTES_77
207.3
MONOCYTES_78
204.6
MONOCYTES_79
201.5
MONOCYTES_80
201.5
MONOCYTES_81
201.5
MONOCYTES_82
199.8
MONOCYTES_83
192.8
MONOCYTES_84
187.4
MONOCYTES_85
184.4
MONOCYTES_86
182.7
MONOCYTES_87
182.2
MONOCYTES_88
180.8
MONOCYTES_89
179.0
MONOCYTES_90
176.3
MONOCYTES_91
169.8
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Non-classical monocyte TPM: 142.8
Samples: 90
Max TPM: 214.6
Min TPM: 78.3
M2_1
214.6
M2_2
185.0
M2_3
184.4
M2_4
180.4
M2_5
174.6
M2_6
170.8
M2_7
170.2
M2_8
167.9
M2_9
167.7
M2_10
166.3
M2_11
165.5
M2_12
165.2
M2_13
164.5
M2_14
163.8
M2_15
162.7
M2_16
160.5
M2_17
160.1
M2_18
159.4
M2_19
159.4
M2_20
158.2
M2_21
157.4
M2_22
157.0
M2_23
156.4
M2_24
155.6
M2_25
154.7
M2_26
154.5
M2_27
153.2
M2_28
152.9
M2_29
152.9
M2_30
152.7
M2_31
152.1
M2_32
151.4
M2_33
150.9
M2_34
150.9
M2_35
150.8
M2_36
150.6
M2_37
150.3
M2_38
150.2
M2_39
150.0
M2_40
149.3
M2_41
149.1
M2_42
148.3
M2_43
148.3
M2_44
147.8
M2_45
146.3
M2_46
144.6
M2_47
143.2
M2_48
142.5
M2_49
142.4
M2_50
141.9
M2_51
141.4
M2_52
140.1
M2_53
140.1
M2_54
139.1
M2_55
138.9
M2_56
136.9
M2_57
135.7
M2_58
135.7
M2_59
134.7
M2_60
134.0
M2_61
133.8
M2_62
133.8
M2_63
133.0
M2_64
131.3
M2_65
131.1
M2_66
131.1
M2_67
129.7
M2_68
129.5
M2_69
129.2
M2_70
128.7
M2_71
128.5
M2_72
126.0
M2_73
125.7
M2_74
125.2
M2_75
124.7
M2_76
124.4
M2_77
122.4
M2_78
121.1
M2_79
120.1
M2_80
119.7
M2_81
118.1
M2_82
113.2
M2_83
108.8
M2_84
103.4
M2_85
101.7
M2_86
99.2
M2_87
99.1
M2_88
99.0
M2_89
98.0
M2_90
78.3
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