A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1323.6
nTPM
Monaco:
35.2
nTPM
TOTAL PBMC - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1323.6
HPA sample
nTPM
Total PBMC nTPM: 1323.6
Samples: 6
Max nTPM: 3021.7
Min nTPM: 479.4
P10809_1008
3021.7
P10809_1036
1146.1
P10809_1055
1141.4
P10809_1074
1116.9
P10809_1076
1036.1
P10809_1095
479.4
TOTAL PBMC - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.2
Monaco sample
nTPM
Total PBMC nTPM: 35.2
Samples: 13
Max nTPM: 61.4
Min nTPM: 16.7
RHH5321_R3688
53.6
RHH5322_R3689
42.9
RHH5323_R3690
61.4
RHH5324_R3691
38.8
RHH5325_R3692
36.2
RHH5326_R3693
46.4
RHH5328_R3702
17.9
RHH5290_R3694
23.9
RHH5291_R3695
21.8
RHH5292_R3696
35.0
RHH5293_R3697
16.7
RHH5294_R3698
25.2
RHH5295_R3699
38.2
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The Human Protein Atlas project is funded
