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  • CPLX2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:433.8 nTPM
HPA Brain:646.2 nTPM
GTEx:433.8 nTPM
FANTOM5:487.4 Scaled Tags Per Million
Pig:321.5 nTPM
Mouse:528.5 nTPM
Allen mouse:31.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

646.2
Sample id Sample description nTPM
Amygdala
nTPM: 191.2
2517 Female, age 94, left hemisphere 395.8
1987 Female, age 91, left hemisphere 236.1
2514 Male, age 75, right hemisphere 210.9
2814 Male, age 76, right hemisphere 64.4
2695 Female, age 67, right hemisphere 49.0
Basal amygdala
nTPM: 594.7
2685 Female, age 94, left hemisphere 949.9
2827 Female, age 67, right hemisphere 697.5
2243 Female, age 91, right hemisphere 638.1
2110 Male, age 80, left hemisphere 544.0
2609 Male, age 75, right hemisphere 486.7
1955 Male, age 76, both hemispheres 252.2
Central amygdala
nTPM: 279.4
2826 Female, age 94, left hemisphere 660.2
2701 Female, age 91, right hemisphere 285.0
2239 Male, age 80, left hemisphere 239.4
2515 Male, age 75, right hemisphere 164.8
1905 Male, age 76, both hemispheres 47.6
Corticomedial amygdala
nTPM: 646.2
2242 Female, age 91, right hemisphere 931.3
2535 Female, age 67, right hemisphere 856.8
2829 Male, age 80, left hemisphere 845.2
2428 Male, age 75, right hemisphere 490.0
2429 Female, age 94, left hemisphere 476.2
2240 Male, age 76, both hemispheres 277.6
Lateral amygdala
nTPM: 317.7
2534 Female, age 94, left hemisphere 780.4
2256 Male, age 80, left hemisphere 491.2
2255 Female, age 91, right hemisphere 220.7
2830 Female, age 67, right hemisphere 164.1
1883 Male, age 76, both hemispheres 139.3
2516 Male, age 75, right hemisphere 110.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

433.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 433.8
Samples: 181

Max nTPM: 1889.9
Min nTPM: 29.3
Std nTPM: 294.0
Median nTPM: 361.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1889.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1331.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1241.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1203.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1116.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1093.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1061.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1015.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 989.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 968.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 961.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 941.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 937.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 897.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 871.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 867.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 863.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 856.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 853.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 796.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 792.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 762.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 757.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 751.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 750.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 746.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 739.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 734.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 733.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 722.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 715.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 707.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 697.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 671.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 664.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 658.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 653.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 638.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 632.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 631.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 630.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 626.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 623.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 621.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 612.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 610.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 609.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 592.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 589.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 578.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 569.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 562.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 550.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 543.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 530.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 530.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 515.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 510.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 509.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 508.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 506.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 504.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 503.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 502.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 495.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 492.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 490.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 477.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 470.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 462.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 455.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 455.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 453.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 436.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 435.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 435.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 433.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 407.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 402.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 400.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 399.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 394.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 393.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 382.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 379.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 378.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 375.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 373.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 368.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 364.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 361.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 357.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 349.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 342.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 334.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 326.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 322.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 320.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 316.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 312.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 311.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 309.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 299.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 294.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 292.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 291.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 290.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 286.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 286.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 279.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 276.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 276.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 276.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 272.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 271.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 269.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 268.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 266.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 263.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 263.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 260.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 259.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 256.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 251.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 250.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 248.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 240.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 239.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 237.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 232.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 232.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 231.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 226.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 225.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 221.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 219.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 217.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 215.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 215.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 215.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 210.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 207.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 206.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 196.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 191.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 190.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 188.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 187.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 178.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 177.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 171.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 171.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 168.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 160.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 155.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 154.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 153.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 149.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 149.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 148.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 140.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 131.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 124.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 123.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 114.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 106.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 104.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 102.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 100.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 99.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 97.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 93.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 88.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 87.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 87.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 73.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 68.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 62.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 57.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 43.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 29.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

487.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 487.4
FF:10151-102I7 76 years, female 487.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

321.5
Pig sample Sample description nTPM
Amygdala
nTPM: 321.5
Samples: 4

Max nTPM: 471.3
Min nTPM: 176.4
Sample A Female 471.3
Sample B Female 176.4
Sample C Male 244.1
Sample D Male 394.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

528.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 528.5
Samples: 4

Max nTPM: 588.1
Min nTPM: 495.1
Sample A Male 495.1
Sample B Male 506.2
Sample C Female 588.1
Sample D Female 524.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

31.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 31.8
308054482 Antisense, RP_110407_01_B06, Mouse strain C57BL/6J (56 days, male) 31.8

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