MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:184.4 nTPM
HPA Brain:363.2 nTPM
GTEx:184.4 nTPM
FANTOM5:8.9 Scaled Tags Per Million
Pig:259.0 nTPM
Mouse:171.1 nTPM
Allen mouse:22.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 363.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 176.5
2666 Male, age 74, left hemisphere 405.9
2219 Male, age 76, both hemispheres 361.5
1827 Male, age 72, unknown 179.1
1833 Male, age 53, unknown 154.6
1870 Female, age 42, unknown 144.2
2586 Male, age 75, left hemisphere 141.2
2411 Female, age 72, unknown 130.9
2828 Female, age 72, unknown 115.1
1830 Male, age 51, unknown 109.0
2019 Male, age 18, unknown 23.4
Dorsal raphe nucleus
nTPM: 174.9
2047 Male, age 72, unknown 259.0
2298 Female, age 72, unknown 210.7
2750 Male, age 76, both hemispheres 210.0
1828 Male, age 53, unknown 125.0
2016 Female, age 72, unknown 69.6
Inferior colliculus
nTPM: 126.3
1848 Female, age 42, unknown 192.0
2849 Male, age 72, unknown 150.0
2097 Female, age 72, unknown 82.3
1890 Male, age 53, unknown 81.0
Median raphe nucleus
nTPM: 354.8
2220 Male, age 76, midline 354.8
Periaquaductal grey, anterior
nTPM: 320.2
1947 Male, age 18, unknown 561.6
2502 Female, age 75, unknown 221.4
1795 Male, age 51, unknown 177.6
Periaquaductal grey, dorsal
nTPM: 131.0
1831 Male, age 72, unknown 177.0
1840 Male, age 53, unknown 134.8
2850 Male, age 76, both hemispheres 116.7
2464 Female, age 72, unknown 95.7
Periaquaductal grey, lateral
nTPM: 76.1
2053 Male, age 18, unknown 108.0
2140 Male, age 76, both hemispheres 75.9
2272 Male, age 74, both hemispheres 44.3
Pretectal area
nTPM: 67.5
2825 Male, age 18, unknown 161.5
2316 Male, age 76, right hemisphere 95.1
2224 Female, age 72, unknown 83.2
2407 Male, age 75, both hemispheres 78.7
1816 Male, age 51, unknown 64.8
1815 Male, age 53, unknown 57.7
2667 Female, age 75, unknown 55.2
1944 Female, age 72, unknown 45.2
1817 Female, age 42, unknown 42.2
2007 Male, age 72, unknown 36.0
2273 Male, age 74, both hemispheres 23.2
Red nucleus
nTPM: 69.1
2584 Male, age 75, left hemisphere 156.3
1821 Female, age 72, unknown 85.8
1904 Male, age 53, unknown 74.1
2769 Male, age 72, unknown 73.5
2227 Male, age 72, unknown 71.8
1954 Female, age 42, unknown 70.3
2823 Male, age 76, right hemisphere 70.2
1865 Male, age 51, unknown 54.4
2588 Male, age 74, left hemisphere 52.4
2503 Female, age 72, unknown 51.0
2725 Female, age 75, unknown 46.1
2785 Male, age 18, unknown 23.2
Substantia nigra
nTPM: 363.2
1916 Female, age 42, unknown 642.6
2665 Male, age 74, both hemispheres 564.4
1851 Male, age 51, unknown 463.4
2241 Male, age 72, unknown 420.6
1941 Male, age 53, unknown 400.7
2699 Male, age 18, unknown 362.7
2409 Female, age 72, unknown 319.0
2590 Female, age 75, unknown 179.5
2583 Male, age 75, right hemisphere 160.0
1889 Female, age 72, unknown 118.6
Superior colliculus
nTPM: 133.9
2668 Female, age 75, unknown 334.1
1796 Male, age 53, unknown 262.0
2261 Male, age 18, unknown 170.9
1895 Male, age 76, right hemisphere 152.6
1839 Male, age 51, unknown 135.6
2664 Male, age 75, both hemispheres 107.3
2587 Male, age 74, left hemisphere 64.3
2087 Female, age 72, unknown 51.2
1913 Female, age 42, unknown 35.3
1995 Male, age 72, unknown 25.6
Ventral tegmental area
nTPM: 296.7
2218 Male, age 76, both hemispheres 404.9
1915 Female, age 42, unknown 402.9
2410 Female, age 72, unknown 334.5
1942 Male, age 51, unknown 306.8
2223 Female, age 72, unknown 212.7
2021 Male, age 53, unknown 118.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 184.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 184.4
Samples: 183

Max nTPM: 809.3
Min nTPM: 1.8
Std nTPM: 183.5
Median nTPM: 104.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 809.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 759.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 647.7
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 643.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 608.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 582.9
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 574.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 569.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 567.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 563.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 544.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.9
FF:10158-103A5 76 years, female 8.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 259.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 259.0
Samples: 4

Max nTPM: 466.9
Min nTPM: 47.0
Sample A Female 357.0
Sample B Female 164.9
Sample C Male 466.9
Sample D Male 47.0
Midbrain
nTPM: 117.5
Samples: 4

Max nTPM: 212.0
Min nTPM: 68.3
Sample A Female 69.6
Sample B Female 119.9
Sample C Male 68.3
Sample D Male 212.0
Periaqueductal gray
nTPM: 65.0
Samples: 3

Max nTPM: 81.3
Min nTPM: 45.9
Sample B Female 67.9
Sample C Male 81.3
Sample D Male 45.9
Superior colliculi
nTPM: 107.6
Samples: 4

Max nTPM: 197.5
Min nTPM: 20.1
Sample A Female 197.5
Sample B Female 20.1
Sample C Male 36.4
Sample D Male 176.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 171.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 171.1
Samples: 4

Max nTPM: 174.7
Min nTPM: 166.3
Sample A Male 174.7
Sample B Male 169.3
Sample C Female 174.2
Sample D Female 166.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 22.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.6
308054482 Antisense, RP_110407_01_B06, Mouse strain C57BL/6J (56 days, male) 22.6

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