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  • TISSUE

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  • RPL7
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1023.3 nTPM
HPA Brain:437.5 nTPM
GTEx:1023.3 nTPM
FANTOM5:3.9 Scaled Tags Per Million
Pig:366.5 nTPM
Mouse:504.5 nTPM
Allen mouse:22.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

437.5
Sample id Sample description nTPM
Amygdala
nTPM: 437.5
2695 Female, age 67, right hemisphere 571.2
2514 Male, age 75, right hemisphere 470.4
1987 Female, age 91, left hemisphere 397.7
2517 Female, age 94, left hemisphere 388.3
2814 Male, age 76, right hemisphere 359.6
Basal amygdala
nTPM: 361.1
2827 Female, age 67, right hemisphere 457.3
2609 Male, age 75, right hemisphere 386.5
2110 Male, age 80, left hemisphere 386.1
2685 Female, age 94, left hemisphere 360.8
1955 Male, age 76, both hemispheres 291.5
2243 Female, age 91, right hemisphere 284.0
Central amygdala
nTPM: 399.4
2826 Female, age 94, left hemisphere 576.0
2515 Male, age 75, right hemisphere 437.7
2239 Male, age 80, left hemisphere 332.6
1905 Male, age 76, both hemispheres 328.3
2701 Female, age 91, right hemisphere 322.4
Corticomedial amygdala
nTPM: 351.2
2428 Male, age 75, right hemisphere 427.6
2829 Male, age 80, left hemisphere 390.9
2535 Female, age 67, right hemisphere 343.5
2429 Female, age 94, left hemisphere 329.8
2242 Female, age 91, right hemisphere 312.9
2240 Male, age 76, both hemispheres 302.3
Lateral amygdala
nTPM: 405.5
2830 Female, age 67, right hemisphere 562.2
2516 Male, age 75, right hemisphere 532.5
2534 Female, age 94, left hemisphere 397.1
2256 Male, age 80, left hemisphere 329.6
1883 Male, age 76, both hemispheres 329.2
2255 Female, age 91, right hemisphere 282.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1023.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1023.3
Samples: 181

Max nTPM: 3174.5
Min nTPM: 502.3
Std nTPM: 349.7
Median nTPM: 959.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3174.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2440.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2433.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2138.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1999.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1899.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1693.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1677.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1618.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1569.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1536.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1529.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1528.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1526.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1506.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1469.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1390.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1387.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1381.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1358.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1339.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1324.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1297.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1277.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1275.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1273.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1262.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1261.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1259.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1254.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1238.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1221.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1219.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1213.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1211.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1210.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1185.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1161.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1158.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1154.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1146.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1144.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1140.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1138.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1128.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1124.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1122.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1119.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1113.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1110.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1109.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1099.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1096.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1092.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1091.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1081.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1074.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1074.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1073.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1066.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1065.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1064.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1058.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1056.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1056.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1054.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1050.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1049.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1049.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1040.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1037.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1035.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1033.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1032.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1030.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1029.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1017.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1010.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1008.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 999.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 998.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 996.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 990.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 990.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 990.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 975.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 974.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 974.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 972.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 967.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 959.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 952.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 952.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 951.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 950.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 944.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 942.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 937.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 935.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 934.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 933.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 932.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 930.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 925.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 920.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 911.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 911.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 907.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 905.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 904.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 901.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 900.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 898.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 898.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 897.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 884.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 872.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 870.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 864.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 862.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 858.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 855.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 850.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 847.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 844.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 839.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 839.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 837.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 836.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 835.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 823.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 820.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 814.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 813.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 812.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 798.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 794.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 794.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 793.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 789.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 788.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 786.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 784.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 782.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 776.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 774.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 772.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 772.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 768.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 760.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 757.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 757.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 752.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 751.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 744.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 731.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 716.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 716.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 714.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 713.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 706.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 703.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 702.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 694.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 686.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 674.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 668.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 663.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 659.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 658.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 653.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 638.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 638.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 617.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 606.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 592.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 578.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 553.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 546.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 539.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 502.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 3.9
FF:10151-102I7 76 years, female 3.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

366.5
Pig sample Sample description nTPM
Amygdala
nTPM: 366.5
Samples: 4

Max nTPM: 456.6
Min nTPM: 232.4
Sample A Female 415.1
Sample B Female 456.6
Sample C Male 361.8
Sample D Male 232.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

504.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 504.6
Samples: 4

Max nTPM: 525.2
Min nTPM: 486.3
Sample A Male 486.3
Sample B Male 525.2
Sample C Female 513.3
Sample D Female 493.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.8
68410596 Antisense, RP_041214_02_C02, Mouse strain C57BL/6J (56 days, male) 22.8

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