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  • RPL7
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1362.4 nTPM
HPA:1187.4 nTPM
GTEx:1362.4 nTPM
FANTOM5:2.5 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA058373
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1187.4
overview
Male, age 65
Small intestine sample 232
nTPM: 1549.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1116.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 968.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1115.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1362.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1362.4
Samples: 207

Max nTPM: 2870.9
Min nTPM: 743.6
Std nTPM: 363.0
Median nTPM: 1298.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2870.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2858.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2779.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2600.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2358.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2314.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2167.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2122.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2108.3
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 2032.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2017.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1952.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1915.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1911.9
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1908.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1897.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1893.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1893.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1891.6
GTEX-1192X-2526-SM-59868 50-59 years, male 1850.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1849.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 1847.5
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1831.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1809.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1754.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1751.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1719.9
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1695.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1688.4
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 1686.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1667.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1658.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1632.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1595.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1590.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1589.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1589.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1588.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1576.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1573.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1563.5
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1558.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1551.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1547.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1544.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1539.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1531.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1524.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1524.5
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1517.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1514.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1511.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1506.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1505.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1502.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1492.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1488.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1483.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1482.8
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1471.9
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1468.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1463.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1456.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1453.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1450.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1441.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1440.2
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1437.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1433.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1432.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1431.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1427.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1426.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1425.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1419.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1416.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1412.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1408.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1405.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1404.5
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 1404.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1403.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1399.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1394.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1382.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1382.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 1370.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1367.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1367.2
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 1367.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1363.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1358.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1346.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1340.9
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1330.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1330.5
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1326.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1309.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1308.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1304.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1302.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1300.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1298.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1298.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1298.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1298.1
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1296.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1294.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1293.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1292.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1290.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1290.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1284.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1283.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1281.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1279.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1274.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1269.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1264.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1263.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1263.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1260.8
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 1259.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1256.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1256.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1239.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1239.4
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1236.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1235.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1233.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1232.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1226.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1219.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1211.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1210.2
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 1208.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1197.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1196.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1191.0
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1188.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1187.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1181.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1181.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1178.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1177.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1176.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1175.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1171.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1160.6
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1143.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1139.0
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1126.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1113.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1111.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1109.6
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1108.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1105.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1103.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1099.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1099.3
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 1097.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1081.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1080.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1079.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1079.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1079.3
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1074.5
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1072.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1069.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1067.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1066.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1061.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1061.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1060.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1058.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1056.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1042.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1039.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1033.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 1021.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1013.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1007.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1003.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 996.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 995.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 981.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 968.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 968.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 958.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 939.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 939.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 931.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 929.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 916.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 913.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 905.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 899.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 886.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 866.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 843.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 831.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 813.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 792.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 792.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 763.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 754.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 743.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2.5
FF:10024-101D6 15,40,85 years, mixed 2.5

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