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RPL7
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RPL7
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:773.9 nTPM
FANTOM5:3.4 Scaled Tags Per Million
Pig:316.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA058373
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

773.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 773.9
Samples: 300

Max nTPM: 1739.5
Min nTPM: 423.7
Std nTPM: 204.3
Median nTPM: 746.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1739.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1635.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1549.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1523.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1514.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1352.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1331.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1320.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1300.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1292.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1281.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1269.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1251.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1174.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1173.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1172.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1165.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1142.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1126.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1125.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1073.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1066.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1064.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1058.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1036.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1026.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1023.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1012.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1010.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1008.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1006.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1000.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 995.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 993.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 993.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 991.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 979.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 976.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 967.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 965.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 965.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 955.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 953.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 952.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 948.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 948.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 945.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 943.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 937.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 936.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 932.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 932.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 928.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 924.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 919.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 912.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 910.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 910.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 908.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 894.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 893.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 888.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 884.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 881.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 877.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 870.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 869.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 865.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 861.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 860.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 860.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 859.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 852.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 849.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 848.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 846.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 844.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 843.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 841.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 840.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 840.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 836.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 833.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 831.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 829.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 825.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 822.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 821.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 820.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 820.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 820.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 818.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 818.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 815.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 815.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 815.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 814.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 814.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 813.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 812.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 811.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 810.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 809.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 808.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 805.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 804.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 803.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 799.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 795.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 795.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 793.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 793.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 792.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 792.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 788.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 787.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 784.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 782.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 780.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 780.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 779.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 777.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 776.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 774.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 771.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 770.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 770.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 769.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 768.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 766.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 766.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 765.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 763.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 762.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 762.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 761.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 758.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 758.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 755.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 754.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 753.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 753.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 751.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 751.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 750.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 749.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 749.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 748.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 748.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 747.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 745.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 744.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 744.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 740.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 740.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 740.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 738.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 736.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 735.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 735.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 735.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 730.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 728.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 728.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 727.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 727.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 726.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 715.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 714.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 710.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 709.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 708.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 708.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 708.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 698.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 697.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 696.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 694.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 693.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 693.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 693.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 693.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 692.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 692.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 691.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 690.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 689.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 688.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 687.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 685.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 683.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 681.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 679.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 678.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 678.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 676.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 675.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 675.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 674.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 673.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 670.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 670.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 669.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 669.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 667.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 667.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 666.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 666.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 663.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 662.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 661.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 660.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 660.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 659.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 658.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 657.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 657.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 656.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 654.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 653.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 653.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 650.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 650.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 648.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 647.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 642.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 642.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 642.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 641.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 639.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 638.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 637.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 634.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 634.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 632.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 628.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 628.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 623.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 621.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 620.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 618.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 615.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 614.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 612.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 607.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 606.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 605.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 605.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 597.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 592.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 590.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 590.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 588.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 588.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 586.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 584.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 582.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 582.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 581.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 581.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 580.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 579.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 577.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 576.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 573.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 563.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 563.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 561.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 560.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 558.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 555.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 553.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 553.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 552.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 550.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 550.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 550.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 546.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 537.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 528.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 524.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 523.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 521.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 520.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 520.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 518.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 517.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 513.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 512.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 504.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 500.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 500.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 498.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 488.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 484.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 477.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 473.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 447.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 441.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 423.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 3.4
FF:10164-103B2 76 years, female 3.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

316.7
Pig sample Sample description nTPM
Caudate
nTPM: 316.7
Samples: 4

Max nTPM: 335.8
Min nTPM: 284.9
Sample A Female 335.8
Sample B Female 317.0
Sample C Male 329.0
Sample D Male 284.9

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