MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:486.7 nTPM
HPA Brain:166.5 nTPM
GTEx:486.7 nTPM
FANTOM5:314.5 Scaled Tags Per Million
Pig:598.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 166.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 158.7
2411 Female, age 72, unknown 170.9
2666 Male, age 74, left hemisphere 166.7
1830 Male, age 51, unknown 163.6
2586 Male, age 75, left hemisphere 160.3
2828 Female, age 72, unknown 160.2
1870 Female, age 42, unknown 159.7
1833 Male, age 53, unknown 155.2
2019 Male, age 18, unknown 152.4
1827 Male, age 72, unknown 149.7
2219 Male, age 76, both hemispheres 148.1
Dorsal raphe nucleus
nTPM: 141.5
2750 Male, age 76, both hemispheres 156.9
2016 Female, age 72, unknown 150.7
1828 Male, age 53, unknown 139.5
2047 Male, age 72, unknown 135.6
2298 Female, age 72, unknown 124.6
Inferior colliculus
nTPM: 154.9
2849 Male, age 72, unknown 174.0
1890 Male, age 53, unknown 157.4
1848 Female, age 42, unknown 154.9
2097 Female, age 72, unknown 133.1
Median raphe nucleus
nTPM: 153.2
2220 Male, age 76, midline 153.2
Periaquaductal grey, anterior
nTPM: 145.4
2502 Female, age 75, unknown 166.1
1795 Male, age 51, unknown 139.4
1947 Male, age 18, unknown 130.5
Periaquaductal grey, dorsal
nTPM: 141.4
1840 Male, age 53, unknown 155.7
2850 Male, age 76, both hemispheres 141.3
2464 Female, age 72, unknown 134.8
1831 Male, age 72, unknown 133.9
Periaquaductal grey, lateral
nTPM: 144.9
2053 Male, age 18, unknown 158.6
2140 Male, age 76, both hemispheres 142.9
2272 Male, age 74, both hemispheres 133.4
Pretectal area
nTPM: 140.2
2407 Male, age 75, both hemispheres 183.6
2825 Male, age 18, unknown 152.3
2224 Female, age 72, unknown 148.7
1815 Male, age 53, unknown 146.2
1817 Female, age 42, unknown 143.9
2316 Male, age 76, right hemisphere 139.0
1816 Male, age 51, unknown 137.0
2007 Male, age 72, unknown 127.4
1944 Female, age 72, unknown 123.1
2667 Female, age 75, unknown 120.4
2273 Male, age 74, both hemispheres 120.3
Red nucleus
nTPM: 165.6
2503 Female, age 72, unknown 185.6
2584 Male, age 75, left hemisphere 180.8
2769 Male, age 72, unknown 179.9
2227 Male, age 72, unknown 174.3
1865 Male, age 51, unknown 173.5
1904 Male, age 53, unknown 172.6
2588 Male, age 74, left hemisphere 170.1
2725 Female, age 75, unknown 159.9
1821 Female, age 72, unknown 155.6
1954 Female, age 42, unknown 149.4
2785 Male, age 18, unknown 148.6
2823 Male, age 76, right hemisphere 136.4
Substantia nigra
nTPM: 165.9
2409 Female, age 72, unknown 208.4
2699 Male, age 18, unknown 192.7
2665 Male, age 74, both hemispheres 187.9
1851 Male, age 51, unknown 179.7
2590 Female, age 75, unknown 168.2
1916 Female, age 42, unknown 158.3
2583 Male, age 75, right hemisphere 146.5
2241 Male, age 72, unknown 145.5
1941 Male, age 53, unknown 138.0
1889 Female, age 72, unknown 133.6
Superior colliculus
nTPM: 154.8
2587 Male, age 74, left hemisphere 189.1
1913 Female, age 42, unknown 175.4
1995 Male, age 72, unknown 168.8
1839 Male, age 51, unknown 158.3
2668 Female, age 75, unknown 155.5
2664 Male, age 75, both hemispheres 154.8
1796 Male, age 53, unknown 154.4
2261 Male, age 18, unknown 139.3
2087 Female, age 72, unknown 127.2
1895 Male, age 76, right hemisphere 125.2
Ventral tegmental area
nTPM: 166.5
2410 Female, age 72, unknown 189.6
2223 Female, age 72, unknown 188.8
1915 Female, age 42, unknown 169.7
2021 Male, age 53, unknown 163.3
2218 Male, age 76, both hemispheres 145.5
1942 Male, age 51, unknown 142.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 486.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 486.7
Samples: 183

Max nTPM: 1000.7
Min nTPM: 191.1
Std nTPM: 156.7
Median nTPM: 471.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1000.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 984.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 926.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 920.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 854.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 852.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 804.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 778.7
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 771.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 762.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 757.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 314.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 314.5
FF:10158-103A5 76 years, female 314.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 598.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 570.3
Samples: 4

Max nTPM: 707.2
Min nTPM: 468.8
Sample A Female 707.2
Sample B Female 561.9
Sample C Male 468.8
Sample D Male 543.1
Midbrain
nTPM: 562.1
Samples: 4

Max nTPM: 887.8
Min nTPM: 373.2
Sample A Female 887.8
Sample B Female 569.2
Sample C Male 418.3
Sample D Male 373.2
Periaqueductal gray
nTPM: 457.1
Samples: 3

Max nTPM: 486.2
Min nTPM: 414.5
Sample B Female 470.7
Sample C Male 486.2
Sample D Male 414.5
Superior colliculi
nTPM: 598.6
Samples: 4

Max nTPM: 688.2
Min nTPM: 503.9
Sample A Female 688.2
Sample B Female 675.4
Sample C Male 503.9
Sample D Male 526.9

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