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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
408.7
Sample id
Sample description
nTPM
Amygdala nTPM: 321.8
1987
Female, age 91, left hemisphere
478.4
2814
Male, age 76, right hemisphere
472.5
2517
Female, age 94, left hemisphere
322.6
2514
Male, age 75, right hemisphere
183.7
2695
Female, age 67, right hemisphere
151.9
Basal amygdala nTPM: 351.4
2243
Female, age 91, right hemisphere
613.7
2110
Male, age 80, left hemisphere
514.0
2685
Female, age 94, left hemisphere
417.3
1955
Male, age 76, both hemispheres
370.5
2827
Female, age 67, right hemisphere
100.2
2609
Male, age 75, right hemisphere
92.9
Central amygdala nTPM: 303.2
2239
Male, age 80, left hemisphere
465.2
1905
Male, age 76, both hemispheres
454.4
2701
Female, age 91, right hemisphere
367.4
2826
Female, age 94, left hemisphere
144.0
2515
Male, age 75, right hemisphere
84.8
Corticomedial amygdala nTPM: 408.7
2829
Male, age 80, left hemisphere
598.2
2242
Female, age 91, right hemisphere
586.5
2429
Female, age 94, left hemisphere
455.7
2240
Male, age 76, both hemispheres
363.3
2535
Female, age 67, right hemisphere
356.4
2428
Male, age 75, right hemisphere
92.1
Lateral amygdala nTPM: 256.3
1883
Male, age 76, both hemispheres
539.6
2255
Female, age 91, right hemisphere
325.8
2534
Female, age 94, left hemisphere
276.9
2256
Male, age 80, left hemisphere
242.1
2516
Male, age 75, right hemisphere
96.8
2830
Female, age 67, right hemisphere
56.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
581.5
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 581.5
Samples: 181
Max nTPM: 2687.8
Min nTPM: 83.3
Std nTPM: 392.9
Median nTPM: 480.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
2687.8
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
1645.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
1565.8
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
1560.3
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
1507.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
1463.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
1376.9
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
1356.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
1345.5
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
1334.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
1289.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
1287.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
1285.6
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
1282.6
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
1251.6
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
1246.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
1164.7
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
1143.4
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
1139.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
1131.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
1117.8
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
1034.0
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
1032.7
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
1015.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
982.5
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
971.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
967.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
963.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
953.7
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
952.4
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
932.1
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
922.7
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
921.4
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
905.5
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
890.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
887.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
883.5
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
868.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
853.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
845.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
841.8
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
833.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
829.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
811.0
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
808.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
796.1
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
791.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
782.6
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
781.9
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
777.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
747.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
724.3
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
711.5
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
703.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
693.5
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
692.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
686.7
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
685.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
675.7
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
674.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
664.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
663.3
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
659.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
650.4
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
646.9
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
640.4
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
636.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
609.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
590.6
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
587.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
581.1
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
579.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
578.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
568.1
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
567.9
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
566.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
548.4
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
546.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
531.5
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
527.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
514.1
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
507.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
498.2
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
494.8
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
493.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
492.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
487.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
484.8
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
481.6
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
481.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
480.3
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
478.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
477.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
476.8
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
469.6
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
463.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
462.7
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
462.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
458.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
458.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
423.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
422.7
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
415.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
400.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
399.4
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
397.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
396.7
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
395.9
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
394.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
380.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
379.1
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
377.7
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
375.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
373.1
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
371.4
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
367.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
357.6
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
352.2
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
350.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
348.5
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
344.6
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
340.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
336.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
335.6
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
334.0
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
332.8
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
328.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
324.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
323.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
323.3
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
314.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
310.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
294.9
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
292.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
282.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
275.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
272.1
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
269.0
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
268.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
263.6
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
257.7
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
257.6
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
248.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
248.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
248.2
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
245.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
245.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
245.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
239.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
239.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
235.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
231.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
230.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
224.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
223.6
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
211.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
207.3
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
202.8
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
195.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
194.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
190.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
187.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
176.3
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
176.1
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
174.7
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
171.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
171.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
171.1
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
165.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
162.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
162.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
150.5
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
142.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
139.6
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
137.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
133.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
132.6
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
124.7
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
124.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
101.8
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
83.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
500.0
Pig sample
Sample description
nTPM
Amygdala nTPM: 500.0
Samples: 4
Max nTPM: 827.5
Min nTPM: 307.0
Sample A
Female
827.5
Sample B
Female
307.0
Sample C
Male
393.9
Sample D
Male
471.5
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
806.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 806.2
Samples: 4
Max nTPM: 907.7
Min nTPM: 752.5
Sample A
Male
907.7
Sample B
Male
772.4
Sample C
Female
792.0
Sample D
Female
752.5
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
