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  • UCHL1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:455.3 nTPM
HPA Brain:537.0 nTPM
GTEx:455.3 nTPM
FANTOM5:408.4 Scaled Tags Per Million
Pig:1118.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

537.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 477.2
2194 Female, age 79, both hemispheres 588.5
1981 Female, age 72, midline 502.7
2816 Male, age 47, midline 500.2
2565 Male, age 75, midline 473.8
2048 Male, age 55, midline 320.9
Cervical spinal cord, dorsal horn
nTPM: 537.0
2296 Male, age 66, both hemispheres 823.7
2173 Female, age 72, unknown 658.3
2297 Male, age 75, both hemispheres 522.2
2069 Male, age 47, both hemispheres 481.6
2721 Male, age 90, both hemispheres 416.1
1877 Male, age 55, unknown 320.0
Cervical spinal cord, ventral horn
nTPM: 408.9
2820 Female, age 79, both hemispheres 558.4
2068 Male, age 55, unknown 545.2
2480 Male, age 75, both hemispheres 507.5
2098 Female, age 72, unknown 346.3
2809 Male, age 90, both hemispheres 270.6
2295 Male, age 66, both hemispheres 225.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

455.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 455.3
Samples: 204

Max nTPM: 1358.4
Min nTPM: 144.0
Std nTPM: 177.7
Median nTPM: 447.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1358.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1227.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 889.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 868.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 850.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 840.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 823.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 791.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 788.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 782.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 742.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 738.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 727.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 722.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 718.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 715.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 709.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 697.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 693.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 683.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 680.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 676.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 670.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 654.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 642.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 641.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 632.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 632.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 626.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 621.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 619.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 617.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 617.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 611.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 610.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 609.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 603.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 596.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 592.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 592.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 575.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 573.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 567.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 566.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 566.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 566.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 565.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 563.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 557.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 555.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 551.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 539.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 536.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 535.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 535.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 532.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 529.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 526.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 526.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 523.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 522.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 521.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 520.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 520.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 513.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 512.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 511.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 509.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 503.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 502.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 499.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 498.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 496.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 494.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 493.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 492.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 491.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 489.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 483.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 483.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 479.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 478.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 477.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 477.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 474.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 465.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 459.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 458.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 456.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 456.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 455.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 455.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 454.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 453.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 453.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 452.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 451.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 451.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 449.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 449.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 448.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 448.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 447.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 442.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 439.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 438.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 437.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 436.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 436.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 436.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 431.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 429.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 426.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 417.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 415.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 414.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 409.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 407.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 393.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 391.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 391.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 384.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 383.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 380.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 379.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 378.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 376.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 373.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 373.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 369.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 366.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 364.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 364.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 363.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 362.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 361.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 357.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 352.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 352.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 350.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 348.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 347.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 346.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 346.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 345.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 343.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 343.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 339.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 338.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 338.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 338.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 338.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 338.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 336.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 335.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 334.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 334.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 324.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 321.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 319.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 319.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 314.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 305.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 302.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 301.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 299.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 299.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 299.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 294.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 293.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 286.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 283.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 282.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 281.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 280.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 274.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 270.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 267.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 265.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 264.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 263.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 263.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 260.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 258.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 255.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 254.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 250.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 245.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 233.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 229.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 227.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 223.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 218.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 212.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 202.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 198.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 198.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 195.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 193.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 192.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 173.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 172.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 162.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 144.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

408.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 408.4
FF:10181-103D1 60 years, female 489.9
FF:10159-103A6 76 years, female 326.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1118.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 771.2
Samples: 4

Max nTPM: 949.7
Min nTPM: 622.7
Sample A Female 949.7
Sample B Female 635.1
Sample C Male 622.7
Sample D Male 877.1
Ventral spinal cord
nTPM: 1118.7
Samples: 4

Max nTPM: 1249.0
Min nTPM: 1066.9
Sample A Female 1082.3
Sample B Female 1249.0
Sample C Male 1066.9
Sample D Male 1076.4

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