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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
717.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 365.7
2411
Female, age 72, unknown
605.1
2219
Male, age 76, both hemispheres
490.2
2666
Male, age 74, left hemisphere
473.0
1827
Male, age 72, unknown
433.5
2828
Female, age 72, unknown
355.3
2019
Male, age 18, unknown
337.9
1870
Female, age 42, unknown
309.6
1833
Male, age 53, unknown
290.7
1830
Male, age 51, unknown
254.2
2586
Male, age 75, left hemisphere
107.1
Dorsal raphe nucleus nTPM: 565.3
2298
Female, age 72, unknown
872.6
2750
Male, age 76, both hemispheres
612.0
2047
Male, age 72, unknown
607.4
1828
Male, age 53, unknown
470.9
2016
Female, age 72, unknown
263.7
Inferior colliculus nTPM: 266.0
2097
Female, age 72, unknown
354.3
1848
Female, age 42, unknown
266.5
1890
Male, age 53, unknown
243.3
2849
Male, age 72, unknown
200.0
Median raphe nucleus nTPM: 717.7
2220
Male, age 76, midline
717.7
Periaquaductal grey, anterior nTPM: 349.0
1795
Male, age 51, unknown
488.8
1947
Male, age 18, unknown
409.7
2502
Female, age 75, unknown
148.6
Periaquaductal grey, dorsal nTPM: 289.1
1840
Male, age 53, unknown
304.6
2850
Male, age 76, both hemispheres
292.2
2464
Female, age 72, unknown
290.6
1831
Male, age 72, unknown
269.0
Periaquaductal grey, lateral nTPM: 345.1
2272
Male, age 74, both hemispheres
523.6
2053
Male, age 18, unknown
264.1
2140
Male, age 76, both hemispheres
247.5
Pretectal area nTPM: 434.5
1944
Female, age 72, unknown
580.9
2224
Female, age 72, unknown
576.3
2007
Male, age 72, unknown
535.6
1816
Male, age 51, unknown
534.7
1817
Female, age 42, unknown
481.4
2273
Male, age 74, both hemispheres
470.0
2667
Female, age 75, unknown
452.0
1815
Male, age 53, unknown
393.3
2825
Male, age 18, unknown
299.5
2407
Male, age 75, both hemispheres
248.3
2316
Male, age 76, right hemisphere
207.9
Red nucleus nTPM: 279.2
2584
Male, age 75, left hemisphere
407.3
1821
Female, age 72, unknown
347.2
1954
Female, age 42, unknown
313.6
2785
Male, age 18, unknown
310.4
2823
Male, age 76, right hemisphere
279.5
2503
Female, age 72, unknown
272.5
1904
Male, age 53, unknown
268.3
2227
Male, age 72, unknown
260.0
2769
Male, age 72, unknown
257.7
2588
Male, age 74, left hemisphere
242.7
1865
Male, age 51, unknown
229.4
2725
Female, age 75, unknown
162.2
Substantia nigra nTPM: 574.5
1916
Female, age 42, unknown
1060.6
2241
Male, age 72, unknown
718.2
1851
Male, age 51, unknown
672.8
1941
Male, age 53, unknown
666.5
2409
Female, age 72, unknown
623.8
1889
Female, age 72, unknown
508.2
2699
Male, age 18, unknown
437.4
2590
Female, age 75, unknown
412.0
2665
Male, age 74, both hemispheres
348.1
2583
Male, age 75, right hemisphere
297.2
Superior colliculus nTPM: 375.9
2668
Female, age 75, unknown
1210.8
2087
Female, age 72, unknown
496.2
1796
Male, age 53, unknown
425.4
2261
Male, age 18, unknown
399.6
1895
Male, age 76, right hemisphere
301.0
1839
Male, age 51, unknown
238.6
1913
Female, age 42, unknown
224.5
2587
Male, age 74, left hemisphere
222.8
1995
Male, age 72, unknown
174.1
2664
Male, age 75, both hemispheres
65.9
Ventral tegmental area nTPM: 590.2
2410
Female, age 72, unknown
830.7
2218
Male, age 76, both hemispheres
824.4
1915
Female, age 42, unknown
677.0
2021
Male, age 53, unknown
429.0
1942
Male, age 51, unknown
416.7
2223
Female, age 72, unknown
363.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
620.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 620.8
Samples: 183
Max nTPM: 3210.8
Min nTPM: 67.8
Std nTPM: 611.8
Median nTPM: 355.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
3210.8
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
3202.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
2851.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
2701.4
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
2565.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
2175.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1977.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1970.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1940.5
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
1907.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1752.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
1745.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1736.9
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1659.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1570.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1563.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1544.9
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
1519.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1447.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
1434.3
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
1340.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1288.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1288.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1282.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1271.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1256.4
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
1222.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1182.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1159.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1153.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1134.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1050.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1037.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1034.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1018.6
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
995.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
992.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
967.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
946.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
920.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
918.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
874.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
858.7
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
845.8
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
844.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
814.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
808.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
805.0
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
791.5
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
765.9
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
758.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
753.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
752.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
752.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
746.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
743.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
743.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
735.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
730.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
725.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
696.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
687.2
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
686.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
638.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
617.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
605.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
579.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
563.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
560.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
532.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
527.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
524.9
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
502.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
496.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
489.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
484.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
456.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
454.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
453.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
452.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
437.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
436.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
403.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
401.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
391.1
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
390.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
389.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
383.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
381.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
381.5
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
363.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
355.6
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
347.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
337.8
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
334.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
333.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
330.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
328.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
328.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
326.7
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
324.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
324.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
321.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
321.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
321.4
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
321.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
309.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
308.3
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
306.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
305.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
290.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
280.6
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
276.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
276.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
274.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
273.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
270.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
268.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
268.0
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
265.5
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
253.8
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
249.9
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
248.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
248.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
247.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
247.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
244.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
242.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
240.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
237.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
224.5
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
221.0
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
220.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
218.5
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
214.7
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
206.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
204.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
198.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
197.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
197.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
195.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
194.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
192.0
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
190.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
190.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
188.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
187.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
186.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
176.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
171.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
167.5
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
160.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
157.6
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
157.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
152.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
152.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
152.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
148.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
148.5
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
148.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
143.4
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
138.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
134.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
133.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
130.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
129.8
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
128.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
120.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
117.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
116.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
114.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
110.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
106.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
103.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
94.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
93.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
92.6
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
91.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
89.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
88.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
88.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
88.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
67.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
830.0
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 830.0
Samples: 4
Max nTPM: 1411.1
Min nTPM: 260.6
Sample A
Female
1411.1
Sample B
Female
534.4
Sample C
Male
1114.0
Sample D
Male
260.6
Midbrain nTPM: 678.5
Samples: 4
Max nTPM: 1066.9
Min nTPM: 465.4
Sample A
Female
658.0
Sample B
Female
523.5
Sample C
Male
1066.9
Sample D
Male
465.4
Periaqueductal gray nTPM: 454.6
Samples: 3
Max nTPM: 650.3
Min nTPM: 348.2
Sample B
Female
365.2
Sample C
Male
650.3
Sample D
Male
348.2
Superior colliculi nTPM: 642.0
Samples: 4
Max nTPM: 1178.4
Min nTPM: 357.6
Sample A
Female
542.5
Sample B
Female
357.6
Sample C
Male
1178.4
Sample D
Male
489.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
233.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 233.3
Samples: 4
Max nTPM: 302.1
Min nTPM: 161.6
Sample A
Male
302.1
Sample B
Male
209.4
Sample C
Female
161.6
Sample D
Female
260.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.