HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		90.180
RNA expressioni
Consensus:562.3 nTPM
HPA Brain:749.5 nTPM
GTEx:562.3 nTPM
FANTOM5:845.6 Scaled Tags Per Million
Pig:708.5 nTPM
Mouse:482.8 nTPM
Allen mouse:23.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005993Antibody CAB002580
Glial cells MediumNot detected
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody CAB079024
Hippocampal formation mean intensity 90.180
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 64.863
Molecular layer of the dentate gyrus 55.265
Granular dentate gyrus 35.970
CA1 - oriens layer 49.595
CA1 - pyramidal layer 46.593
CA1 - radiatum layer 55.256
CA2 - oriens layer 71.373
CA2 - pyramidal layer 69.925
CA2 - radiatum layer 75.225
CA3 - oriens layer 90.180
CA3 - pyramidal layer 80.830
CA3 - radiatum layer 78.164
Stratum lucidum 69.347
Lacunosum moleculare 41.510
Subiculum 58.788

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 749.5
Sample id Sample description nTPM
Hippocampus
nTPM: 491.2
1898 Male, age 80, left hemisphere 749.7
2621 Female, age 67, right hemisphere 683.6
2148 Female, age 91, left hemisphere 473.2
1855 Male, age 76, left hemisphere 413.1
1911 Female, age 85, right hemisphere 394.9
2529 Female, age 94, left hemisphere 232.8
Dentate gyrus
nTPM: 554.4
1927 Female, age 91, both hemispheres 898.9
2010 Male, age 76, both hemispheres 586.0
2528 Male, age 74, both hemispheres 557.5
2530 Female, age 94, left hemisphere 471.8
2246 Female, age 85, both hemispheres 449.9
2531 Female, age 67, both hemispheres 362.3
Entorhinal gyrus
nTPM: 489.2
2764 Male, age 80, right hemisphere 723.3
2613 Female, age 94, left hemisphere 705.7
1938 Female, age 85, left hemisphere 550.4
1787 Male, age 76, left hemisphere 441.4
2117 Female, age 91, right hemisphere 292.7
2686 Male, age 75, right hemisphere 221.5
Hippocampus, CA1
nTPM: 725.5
2749 Male, age 80, left hemisphere 1355.8
2527 Male, age 74, both hemispheres 645.2
2082 Female, age 91, right hemisphere 615.0
1873 Female, age 85, both hemispheres 541.3
2045 Male, age 76, both hemispheres 470.5
Hippocampus, CA2
nTPM: 574.9
1963 Male, age 80, left hemisphere 814.2
2249 Male, age 74, both hemispheres 710.4
1892 Male, age 76, both hemispheres 658.6
2113 Female, age 91, right hemisphere 459.0
1940 Female, age 85, left hemisphere 433.1
2437 Female, age 94, left hemisphere 373.8
Hippocampus, CA3
nTPM: 518.4
2137 Male, age 80, left hemisphere 771.2
2436 Male, age 74, both hemispheres 707.7
1867 Male, age 76, both hemispheres 471.3
2620 Female, age 94, left hemisphere 435.0
2861 Female, age 67, both hemispheres 394.8
1891 Female, age 85, both hemispheres 330.5
Parahippocampal cortex
nTPM: 517.2
2245 Female, age 91, both hemispheres 636.4
1990 Female, age 91, right hemisphere 633.3
1850 Male, age 80, both hemispheres 630.6
2250 Female, age 67, right hemisphere 622.7
1933 Female, age 85, both hemispheres 622.0
2622 Female, age 67, right hemisphere 481.5
2693 Female, age 94, both hemispheres 476.1
2532 Female, age 72, left hemisphere 452.6
2018 Male, age 76, both hemispheres 406.7
2692 Male, age 74, both hemispheres 210.7
Perirhinal gyrus
nTPM: 749.5
1847 Female, age 91, left hemisphere 1144.1
2521 Female, age 94, right hemisphere 825.6
1794 Male, age 80, right hemisphere 735.8
1841 Female, age 85, right hemisphere 589.0
2848 Male, age 76, right hemisphere 453.0
Subiculum
nTPM: 345.7
1977 Female, age 85, both hemispheres 511.7
1901 Male, age 80, both hemispheres 464.3
2729 Female, age 91, right hemisphere 306.8
2619 Male, age 74, both hemispheres 290.7
2042 Male, age 76, both hemispheres 275.7
2438 Female, age 94, left hemisphere 225.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 562.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 562.3
Samples: 255

Max nTPM: 2065.8
Min nTPM: 65.5
Std nTPM: 389.0
Median nTPM: 475.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 2065.8
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 1769.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1642.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 1621.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 1598.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 1586.8
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 1533.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1507.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 1458.5
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 1431.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1428.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 845.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 845.6
FF:10169-103B7 60 years, female 1329.3
FF:10153-102I9 76 years, female 361.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 708.5
Pig sample Sample description nTPM
Subiculum
nTPM: 623.9
Samples: 4

Max nTPM: 767.5
Min nTPM: 573.3
Sample A Female 767.5
Sample B Female 578.2
Sample C Male 573.3
Sample D Male 576.7
Dorsal hippocampus
nTPM: 698.1
Samples: 4

Max nTPM: 1035.1
Min nTPM: 452.7
Sample A Female 1035.1
Sample B Female 835.2
Sample C Male 452.7
Sample D Male 469.3
Entorhinal cortex
nTPM: 505.5
Samples: 4

Max nTPM: 613.9
Min nTPM: 414.4
Sample A Female 613.9
Sample B Female 462.1
Sample C Male 531.7
Sample D Male 414.4
Ventral hippocampus
nTPM: 708.5
Samples: 4

Max nTPM: 857.6
Min nTPM: 433.5
Sample A Female 839.6
Sample B Female 433.5
Sample C Male 857.6
Sample D Male 703.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 482.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 482.9
Samples: 4

Max nTPM: 579.2
Min nTPM: 408.6
Sample A Male 421.1
Sample B Male 579.2
Sample C Female 408.6
Sample D Female 522.5
Hippocampal formation
nTPM: 442.4
Samples: 4

Max nTPM: 499.8
Min nTPM: 394.7
Sample A Male 401.4
Sample B Male 473.6
Sample C Female 394.7
Sample D Female 499.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 23.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.6
79556674 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 28.1
79632309 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 22.9
1089 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 19.1
1088 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 15.7

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