RPL30
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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • EVOLUTION

  • RPL30
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1330.7 nTPM
HPA Brain:366.8 nTPM
GTEx:1330.7 nTPM
FANTOM5:302.8 Scaled Tags Per Million
Macaque:269.7 nTPM
Mouse:266.8 nTPM
Rat:175.1 nTPM
Pig:106.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA002651
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 15021
Sample Intensity
Hippocampal formation_01
14084
Hippocampal formation_02
14520
Hippocampal formation_03
4014
Hippocampal formation_04
16049
Hippocampal formation_05
15522
Hippocampal formation_06
31230

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

366.8
Sample id Sample description nTPM
Dentate gyrus
nTPM: 338.4
2530 Female, age 94, left hemisphere 434.2
2010 Male, age 76, both hemispheres 404.8
2246 Female, age 85, both hemispheres 348.8
2531 Female, age 67, both hemispheres 324.4
1927 Female, age 91, both hemispheres 262.1
2528 Male, age 74, both hemispheres 255.9
Entorhinal gyrus
nTPM: 321.2
2686 Male, age 75, right hemisphere 415.1
2117 Female, age 91, right hemisphere 345.4
1787 Male, age 76, left hemisphere 336.6
2764 Male, age 80, right hemisphere 301.1
1938 Female, age 85, left hemisphere 296.9
2613 Female, age 94, left hemisphere 231.8
Hippocampus, CA1
nTPM: 307.0
2045 Male, age 76, both hemispheres 324.0
2527 Male, age 74, both hemispheres 318.8
2082 Female, age 91, right hemisphere 314.2
1873 Female, age 85, both hemispheres 304.4
2749 Male, age 80, left hemisphere 273.8
Hippocampus, CA2
nTPM: 322.2
2437 Female, age 94, left hemisphere 354.2
1940 Female, age 85, left hemisphere 340.8
1892 Male, age 76, both hemispheres 325.7
1963 Male, age 80, left hemisphere 323.5
2113 Female, age 91, right hemisphere 301.3
2249 Male, age 74, both hemispheres 287.9
Hippocampus, CA3
nTPM: 280.0
1891 Female, age 85, both hemispheres 377.8
1867 Male, age 76, both hemispheres 355.8
2861 Female, age 67, both hemispheres 263.9
2436 Male, age 74, both hemispheres 258.3
2137 Male, age 80, left hemisphere 247.6
2620 Female, age 94, left hemisphere 176.8
Parahippocampal cortex
nTPM: 301.9
2018 Male, age 76, both hemispheres 444.7
2692 Male, age 74, both hemispheres 320.9
2532 Female, age 72, left hemisphere 315.1
1850 Male, age 80, both hemispheres 308.7
2245 Female, age 91, both hemispheres 304.2
1990 Female, age 91, right hemisphere 296.8
1933 Female, age 85, both hemispheres 294.9
2250 Female, age 67, right hemisphere 285.4
2622 Female, age 67, right hemisphere 231.9
2693 Female, age 94, both hemispheres 215.8
Perirhinal gyrus
nTPM: 301.6
1841 Female, age 85, right hemisphere 325.7
1847 Female, age 91, left hemisphere 314.4
1794 Male, age 80, right hemisphere 306.6
2848 Male, age 76, right hemisphere 296.3
2521 Female, age 94, right hemisphere 265.0
Subiculum
nTPM: 366.8
2042 Male, age 76, both hemispheres 462.0
2438 Female, age 94, left hemisphere 452.9
1977 Female, age 85, both hemispheres 364.1
1901 Male, age 80, both hemispheres 349.3
2619 Male, age 74, both hemispheres 290.2
2729 Female, age 91, right hemisphere 282.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1330.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1330.7
Samples: 255

Max nTPM: 4050.7
Min nTPM: 468.8
Std nTPM: 502.4
Median nTPM: 1197.3
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 4050.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 3540.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 2873.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 2782.5
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 2761.6
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 2704.6
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 2639.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 2506.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 2457.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 2436.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 2370.6
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 2349.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 2348.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 2289.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 2264.7
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 2138.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 2133.9
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 2100.2
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 2074.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 2074.4
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 2044.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 2032.1
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 2010.5
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1997.2
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 1952.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1942.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 1935.9
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 1928.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 1924.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 1906.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 1897.4
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 1880.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1868.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 1857.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 1842.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 1837.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 1834.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1831.2
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 1786.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 1781.5
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 1773.5
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 1766.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 1765.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 1758.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 1754.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 1737.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 1686.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 1683.8
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 1675.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 1671.2
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 1654.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1651.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 1649.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 1646.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1643.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 1640.2
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 1636.3
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 1627.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 1623.0
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 1621.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 1618.4
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 1608.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 1605.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1604.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 1603.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 1602.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1584.1
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 1577.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 1577.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 1555.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 1539.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 1532.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 1494.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1482.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 1480.1
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 1477.1
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 1473.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 1470.8
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 1465.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1455.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 1443.3
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 1432.7
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 1422.7
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 1412.6
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 1408.5
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 1398.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1397.9
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 1395.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 1395.0
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 1389.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 1387.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 1380.1
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 1375.6
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 1369.1
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 1358.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 1355.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 1345.4
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 1335.1
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 1333.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 1332.6
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 1302.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 1301.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 1298.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 1292.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 1290.1
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 1287.8
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 1287.5
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 1280.9
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 1275.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 1273.3
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 1267.7
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 1259.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 1258.4
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 1258.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 1257.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 1254.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 1249.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 1241.6
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 1226.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 1225.0
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 1224.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 1219.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 1217.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1215.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 1208.9
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 1202.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 1202.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 1197.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1189.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 1182.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 1179.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 1178.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1173.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 1173.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 1172.2
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 1169.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 1169.3
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 1166.7
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 1163.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 1161.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 1160.8
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 1160.7
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 1159.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 1157.2
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 1157.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1154.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 1154.6
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 1154.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 1147.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 1147.3
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 1143.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 1133.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 1132.6
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 1130.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 1129.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 1128.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 1125.8
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 1122.4
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 1114.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 1110.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 1103.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 1102.3
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 1098.9
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 1095.8
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 1094.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 1089.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 1082.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 1072.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 1071.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1069.6
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 1067.7
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 1066.3
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 1065.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 1055.2
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 1053.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1053.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1040.9
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 1037.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 1035.3
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 1032.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 1026.0
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 1023.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 1023.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 1014.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 1007.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 1005.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 1005.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 1004.6
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 999.1
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 994.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 990.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 985.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 980.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 977.2
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 977.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 973.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 967.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 952.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 950.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 950.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 947.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 944.2
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 943.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 941.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 938.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 932.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 925.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 920.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 912.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 912.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 910.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 905.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 902.2
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 899.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 895.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 891.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 891.1
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 878.1
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 867.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 864.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 860.9
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 858.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 857.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 854.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 847.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 840.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 840.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 838.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 826.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 826.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 823.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 821.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 808.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 801.8
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 793.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 791.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 789.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 781.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 774.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 771.3
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 769.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 767.9
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 762.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 755.1
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 754.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 741.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 723.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 718.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 691.7
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 686.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 675.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 637.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 635.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 609.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 468.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

302.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 302.8
FF:10153-102I9 76 years, female 322.2
FF:10169-103B7 60 years, female 283.5

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.7
Macaque sample Sample description nTPM
Subiculum
nTPM: 193.6
Samples: 1

Max nTPM: 193.6
Min nTPM: 193.6
Sample A 193.6
Entorhinal cortex
nTPM: 269.7
Samples: 2

Max nTPM: 290.4
Min nTPM: 249.0
Sample A 290.4
Sample B 249.0
Hippocampal formation
nTPM: 252.9
Samples: 4

Max nTPM: 300.4
Min nTPM: 198.0
Sample A 215.4
Sample B 198.0
Sample C 297.6
Sample D 300.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.5
Pig sample Sample description nTPM
Subiculum
nTPM: 88.3
Samples: 4

Max nTPM: 139.9
Min nTPM: 60.9
Sample A Female 139.9
Sample B Female 80.2
Sample C Male 60.9
Sample D Male 72.1
Dorsal hippocampus
nTPM: 106.5
Samples: 4

Max nTPM: 160.3
Min nTPM: 69.6
Sample A Female 160.3
Sample B Female 91.7
Sample C Male 104.5
Sample D Male 69.6
Entorhinal cortex
nTPM: 94.2
Samples: 4

Max nTPM: 125.9
Min nTPM: 64.7
Sample A Female 81.2
Sample B Female 125.9
Sample C Male 104.8
Sample D Male 64.7
Ventral hippocampus
nTPM: 90.8
Samples: 4

Max nTPM: 108.4
Min nTPM: 80.2
Sample A Female 108.4
Sample B Female 81.2
Sample C Male 93.2
Sample D Male 80.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

266.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 252.9
Samples: 4

Max nTPM: 255.8
Min nTPM: 248.2
Sample A 254.5
Sample B 248.2
Sample C 255.8
Sample D 253.1
Hippocampal formation
nTPM: 266.8
Samples: 4

Max nTPM: 305.9
Min nTPM: 233.7
Sample A 290.6
Sample B 237.1
Sample C 233.7
Sample D 305.9

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.1
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 168.5
Samples: 4

Max nTPM: 190.3
Min nTPM: 131.0
Sample A 184.9
Sample A 167.8
Sample A 190.3
Sample B 131.0
Ventral hippocampus
nTPM: 175.1
Samples: 4

Max nTPM: 191.3
Min nTPM: 139.6
Sample A 183.4
Sample A 139.6
Sample A 191.3
Sample A 186.3

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