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BETA
  • SUMMARY

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  • RPL30
EVOLUTIONARY VAGINA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Breast & female reproductive system
Evolutionary methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2393.4 nTPM
GTEx:2393.4 nTPM
FANTOM5:1556.1 Scaled Tags Per Million
Macaque:764.9 nTPM
Mouse:1582.3 nTPM
Rat:1086.6 nTPM

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA002651
Squamous epithelial cells Medium



VAGINA - PROTEINTALKS DB MS
Median intensity 20956
Sample Intensity
Vagina_01
20956

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2393.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2393.4
Samples: 170

Max nTPM: 5195.2
Min nTPM: 1357.8
Std nTPM: 626.0
Median nTPM: 2278.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 5195.2
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 5034.8
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 4465.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 4102.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 4004.3
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 3956.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3531.6
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 3529.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 3508.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 3497.9
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 3385.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 3349.7
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 3335.8
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 3287.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3257.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 3247.6
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 3183.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 3165.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 3111.4
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 3098.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2997.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2991.2
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 2983.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2977.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2964.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2964.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2917.0
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 2887.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2884.0
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 2861.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2821.8
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 2779.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2770.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2745.8
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2730.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2728.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2728.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2727.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2718.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2714.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2713.4
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 2709.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2685.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2681.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2675.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2647.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2638.3
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2620.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2619.9
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2617.4
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 2562.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2559.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2558.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2551.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2545.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2533.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2523.5
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 2520.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2514.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2512.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2509.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2509.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2508.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2505.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2493.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2492.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2485.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 2474.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2471.1
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 2447.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2439.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2410.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2393.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2390.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2370.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2369.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2368.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2366.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2364.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2364.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2348.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2329.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2312.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2295.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2284.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2273.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2273.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2271.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2270.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2260.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2256.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2239.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2232.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 2230.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2228.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2217.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2214.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2203.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2193.3
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2169.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 2168.3
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 2164.6
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2151.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2146.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 2145.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2129.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2123.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2111.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2084.1
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 2079.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2049.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2043.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2036.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2023.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2001.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1974.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1972.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1968.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1968.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1968.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 1964.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1963.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1963.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1957.6
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1956.2
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1954.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1945.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1928.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1927.1
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1926.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1925.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1924.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1924.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1913.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1913.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1902.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1890.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1882.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1874.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1874.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1868.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1841.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1835.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1827.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1820.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1810.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1808.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1790.7
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1784.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1776.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1769.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1766.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1743.2
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1740.8
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1729.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1728.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1720.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1711.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1708.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 1699.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1689.1
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1669.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1656.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1653.6
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1630.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1543.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1521.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1485.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1394.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1357.8
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1556.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1556.1
FF:10204-103F6 68 years, female 1556.1

VAGINA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

764.9
Macaque sample Sample description nTPM
Vagina
nTPM: 764.9
Samples: 1

Max nTPM: 764.9
Min nTPM: 764.9
Sample A 764.9

VAGINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1582.3
Mouse sample Sample description nTPM
Vagina
nTPM: 1582.3
Samples: 2

Max nTPM: 1741.7
Min nTPM: 1422.9
Sample A 1741.7
Sample B 1422.9

VAGINA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1086.6
Rat sample Sample description nTPM
Vagina
nTPM: 1086.6
Samples: 2

Max nTPM: 1286.1
Min nTPM: 887.1
Sample A 887.1
Sample A 1286.1

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