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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

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  • CELL LINE

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  • EVOLUTION

  • RPL30
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:432.6 nTPM
GTEx:1802.6 nTPM
FANTOM5:532.1 Scaled Tags Per Million
Macaque:326.1 nTPM
Pig:130.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

432.6
Sample id Sample description nTPM
Substantia nigra
nTPM: 432.6
2699 Male, age 18, unknown 622.4
1851 Male, age 51, unknown 515.5
2665 Male, age 74, both hemispheres 491.2
2409 Female, age 72, unknown 449.7
1916 Female, age 42, unknown 429.8
1889 Female, age 72, unknown 416.4
2241 Male, age 72, unknown 398.3
2590 Female, age 75, unknown 373.6
1941 Male, age 53, unknown 349.9
2583 Male, age 75, right hemisphere 278.8

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1802.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1802.6
Samples: 183

Max nTPM: 4503.0
Min nTPM: 521.8
Std nTPM: 692.1
Median nTPM: 1718.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4503.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4288.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3904.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 3813.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 3386.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 3190.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 3159.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3154.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 3140.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 3124.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2965.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2937.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 2899.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 2847.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 2845.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2825.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2812.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2808.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 2733.0
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 2611.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 2574.5
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 2558.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2551.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2529.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 2520.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 2500.5
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 2482.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2479.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2457.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2440.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2417.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 2417.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2413.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 2387.9
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 2384.9
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 2368.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2360.2
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 2336.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 2309.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 2308.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 2284.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 2266.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 2219.7
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 2190.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2188.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 2178.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 2177.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 2171.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 2167.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 2166.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 2157.7
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 2149.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 2076.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 2067.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 2052.3
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 2047.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2036.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 2032.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 2032.5
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 2025.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 2008.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 2007.5
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 1999.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1997.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1995.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1976.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1975.7
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 1949.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 1940.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 1934.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1933.3
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 1914.7
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 1885.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 1856.9
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 1852.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1846.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1843.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1840.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1833.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 1823.0
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 1817.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1814.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1796.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1791.8
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 1786.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1780.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 1752.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1750.7
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 1742.6
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 1732.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 1726.2
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 1718.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 1711.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1711.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1698.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1676.3
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 1669.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 1668.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 1654.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1641.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 1634.2
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 1634.0
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 1603.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 1571.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1539.5
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 1535.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 1516.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 1511.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 1495.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 1492.7
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 1465.0
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 1465.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1462.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1422.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 1421.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1416.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 1415.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 1403.4
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 1402.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 1396.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1391.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1376.9
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 1371.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1362.0
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 1361.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 1345.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 1340.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 1335.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1322.7
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 1321.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 1316.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 1297.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 1291.5
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 1290.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1282.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1276.4
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 1275.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 1263.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 1243.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 1242.5
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 1235.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 1232.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 1230.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 1226.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 1223.3
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 1211.2
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 1209.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 1208.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1207.6
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 1205.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 1194.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1191.2
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 1185.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 1182.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1161.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1155.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 1146.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 1138.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 1111.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 1099.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 1095.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1092.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 1089.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 1080.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 1075.7
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 1054.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 1049.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1038.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 1038.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 1032.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1004.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 1004.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 986.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 980.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 969.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 958.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 803.5
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 795.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 786.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 779.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 731.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 540.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 521.8
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

532.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 532.1
FF:10158-103A5 76 years, female 532.1

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

326.1
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 326.1
Samples: 1

Max nTPM: 326.1
Min nTPM: 326.1
Sample A 326.1

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 130.1
Samples: 3

Max nTPM: 181.9
Min nTPM: 83.2
Sample A Female 181.9
Sample B Female 125.1
Sample C Male 83.2

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