On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
196.5
nTPM
HPA Brain:
104.5
nTPM
GTEx:
196.5
nTPM
FANTOM5:
77.0
Scaled Tags Per Million
Macaque:
85.7
nTPM
Mouse:
144.4
nTPM
Rat:
87.3
nTPM
Pig:
123.3
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
104.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 87.1
2411
Female, age 72, unknown
109.0
2019
Male, age 18, unknown
100.5
1827
Male, age 72, unknown
94.5
1870
Female, age 42, unknown
91.4
1833
Male, age 53, unknown
84.2
2828
Female, age 72, unknown
82.6
1830
Male, age 51, unknown
80.2
2219
Male, age 76, both hemispheres
80.2
2666
Male, age 74, left hemisphere
75.9
2586
Male, age 75, left hemisphere
72.7
Dorsal raphe nucleus nTPM: 104.5
2298
Female, age 72, unknown
145.6
2047
Male, age 72, unknown
105.6
2750
Male, age 76, both hemispheres
99.3
1828
Male, age 53, unknown
91.1
2016
Female, age 72, unknown
81.0
Inferior colliculus nTPM: 84.6
2097
Female, age 72, unknown
103.4
1890
Male, age 53, unknown
84.4
1848
Female, age 42, unknown
78.6
2849
Male, age 72, unknown
72.1
Median raphe nucleus nTPM: 95.2
2220
Male, age 76, midline
95.2
Periaquaductal grey, anterior nTPM: 99.2
2502
Female, age 75, unknown
101.8
1947
Male, age 18, unknown
100.7
1795
Male, age 51, unknown
95.0
Periaquaductal grey, dorsal nTPM: 76.4
1840
Male, age 53, unknown
83.8
2464
Female, age 72, unknown
76.1
1831
Male, age 72, unknown
74.1
2850
Male, age 76, both hemispheres
71.7
Periaquaductal grey, lateral nTPM: 84.3
2272
Male, age 74, both hemispheres
102.1
2053
Male, age 18, unknown
79.7
2140
Male, age 76, both hemispheres
71.0
Pretectal area nTPM: 99.3
2007
Male, age 72, unknown
117.8
1944
Female, age 72, unknown
115.6
2273
Male, age 74, both hemispheres
115.3
1817
Female, age 42, unknown
113.5
1816
Male, age 51, unknown
112.3
2224
Female, age 72, unknown
105.0
1815
Male, age 53, unknown
96.0
2667
Female, age 75, unknown
94.4
2825
Male, age 18, unknown
76.7
2316
Male, age 76, right hemisphere
72.9
2407
Male, age 75, both hemispheres
72.1
Red nucleus nTPM: 86.6
1821
Female, age 72, unknown
106.1
2503
Female, age 72, unknown
100.3
2785
Male, age 18, unknown
98.0
2725
Female, age 75, unknown
94.1
1954
Female, age 42, unknown
92.9
1865
Male, age 51, unknown
90.3
1904
Male, age 53, unknown
86.0
2227
Male, age 72, unknown
82.6
2769
Male, age 72, unknown
82.2
2823
Male, age 76, right hemisphere
73.3
2584
Male, age 75, left hemisphere
67.8
2588
Male, age 74, left hemisphere
65.5
Substantia nigra nTPM: 103.6
1916
Female, age 42, unknown
131.9
1851
Male, age 51, unknown
119.4
1889
Female, age 72, unknown
115.1
1941
Male, age 53, unknown
110.6
2241
Male, age 72, unknown
106.8
2409
Female, age 72, unknown
100.6
2665
Male, age 74, both hemispheres
96.6
2699
Male, age 18, unknown
88.9
2590
Female, age 75, unknown
86.6
2583
Male, age 75, right hemisphere
79.4
Superior colliculus nTPM: 86.5
2587
Male, age 74, left hemisphere
98.0
2261
Male, age 18, unknown
97.4
1796
Male, age 53, unknown
96.6
2087
Female, age 72, unknown
96.6
2668
Female, age 75, unknown
93.2
1895
Male, age 76, right hemisphere
82.6
1913
Female, age 42, unknown
82.1
1995
Male, age 72, unknown
78.3
1839
Male, age 51, unknown
74.1
2664
Male, age 75, both hemispheres
66.6
Ventral tegmental area nTPM: 100.9
2410
Female, age 72, unknown
131.5
1915
Female, age 42, unknown
109.9
2218
Male, age 76, both hemispheres
100.5
1942
Male, age 51, unknown
92.0
2021
Male, age 53, unknown
87.0
2223
Female, age 72, unknown
84.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
196.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 196.5
Samples: 183
Max nTPM: 338.2
Min nTPM: 118.5
Std nTPM: 39.6
Median nTPM: 187.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
338.2
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
335.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
318.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
309.8
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
301.5
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
289.5
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
285.3
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
278.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
278.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
271.9
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
263.7
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
262.0
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
260.7
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
259.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
257.0
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
255.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
255.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
255.1
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
250.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
248.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
248.0
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
245.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
241.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
239.9
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
239.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
239.6
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
238.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
238.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
238.4
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
232.0
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
231.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
231.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
231.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
229.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
228.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
226.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
226.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
225.9
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
225.1
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
224.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
224.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
222.4
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
218.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
218.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
217.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
217.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
216.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
214.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
213.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
212.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
212.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
210.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
210.4
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
209.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
208.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
207.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
207.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
207.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
205.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
205.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
203.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
203.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
202.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
202.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
202.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
200.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
200.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
200.3
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
199.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
199.1
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
199.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
198.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
197.7
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
197.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
197.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
197.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
196.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
196.2
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
194.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
193.4
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
192.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
191.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
191.2
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
190.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
190.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
190.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
190.0
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
189.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
188.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
188.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
188.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
187.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
187.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
186.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
186.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
186.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
186.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
185.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
185.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
184.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
184.4
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
184.3
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
184.1
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
183.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
182.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
182.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
182.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
182.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
181.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
181.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
180.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
178.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
178.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
177.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
177.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
177.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
177.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
177.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
176.7
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
176.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
176.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
176.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
175.1
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
175.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
173.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
173.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
173.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
173.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
173.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
173.3
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
172.3
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
172.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
171.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
171.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
171.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
170.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
170.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
169.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
169.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
169.1
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
169.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
168.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
167.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
165.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
165.0
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
165.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
164.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
164.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
164.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
163.4
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
163.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
162.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
162.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
162.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
160.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
159.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
159.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
159.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
157.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
157.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
157.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
156.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
156.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
155.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
154.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
154.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
154.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
153.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
153.6
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
153.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
152.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
150.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
146.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
145.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
144.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
143.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
141.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
141.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
140.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
139.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
136.8
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
118.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
118.5
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
85.7
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 85.7
Samples: 1
Max nTPM: 85.7
Min nTPM: 85.7
Sample A
85.7
Midbrain nTPM: 84.3
Samples: 1
Max nTPM: 84.3
Min nTPM: 84.3
Sample A
84.3
Superior colliculi nTPM: 82.7
Samples: 1
Max nTPM: 82.7
Min nTPM: 82.7
Sample A
82.7
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
123.3
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 112.7
Samples: 3
Max nTPM: 152.5
Min nTPM: 91.8
Sample A
Female
152.5
Sample B
Female
91.8
Sample C
Male
93.9
Midbrain nTPM: 100.3
Samples: 3
Max nTPM: 106.2
Min nTPM: 90.5
Sample B
Female
104.2
Sample C
Male
106.2
Sample D
Male
90.5
Periaqueductal gray nTPM: 85.1
Samples: 3
Max nTPM: 99.2
Min nTPM: 70.9
Sample B
Female
85.2
Sample C
Male
99.2
Sample D
Male
70.9
Superior colliculi nTPM: 123.3
Samples: 4
Max nTPM: 150.7
Min nTPM: 102.5
Sample A
Female
150.7
Sample B
Female
122.0
Sample C
Male
117.9
Sample D
Male
102.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
144.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 144.4
Samples: 4
Max nTPM: 160.8
Min nTPM: 132.3
Sample A
143.5
Sample B
160.8
Sample C
132.3
Sample D
140.8
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
87.3
Rat sample
Sample description
nTPM
Midbrain nTPM: 87.3
Samples: 4
Max nTPM: 89.4
Min nTPM: 83.5
Sample A
89.1
Sample A
87.3
Sample A
89.4
Sample A
83.5
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
