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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:868.6 nTPM
HPA Brain:1225.8 nTPM
GTEx:868.6 nTPM
FANTOM5:1069.2 Scaled Tags Per Million
Pig:1316.5 nTPM
Mouse:1001.6 nTPM
Allen mouse:2.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1225.8
Sample id Sample description nTPM
Amygdala
nTPM: 894.3
2814 Male, age 76, right hemisphere 1206.3
1987 Female, age 91, left hemisphere 974.5
2517 Female, age 94, left hemisphere 957.3
2514 Male, age 75, right hemisphere 725.2
2695 Female, age 67, right hemisphere 608.1
Basal amygdala
nTPM: 1225.8
2243 Female, age 91, right hemisphere 1699.6
2685 Female, age 94, left hemisphere 1427.4
2110 Male, age 80, left hemisphere 1331.9
1955 Male, age 76, both hemispheres 1051.4
2827 Female, age 67, right hemisphere 962.3
2609 Male, age 75, right hemisphere 882.1
Central amygdala
nTPM: 1081.2
2239 Male, age 80, left hemisphere 1288.2
2826 Female, age 94, left hemisphere 1266.9
2701 Female, age 91, right hemisphere 1062.5
1905 Male, age 76, both hemispheres 1050.3
2515 Male, age 75, right hemisphere 738.0
Corticomedial amygdala
nTPM: 1202.0
2242 Female, age 91, right hemisphere 1580.8
2829 Male, age 80, left hemisphere 1549.4
2535 Female, age 67, right hemisphere 1153.3
2429 Female, age 94, left hemisphere 1128.2
2240 Male, age 76, both hemispheres 1035.4
2428 Male, age 75, right hemisphere 765.0
Lateral amygdala
nTPM: 1018.3
2534 Female, age 94, left hemisphere 1396.8
1883 Male, age 76, both hemispheres 1179.9
2255 Female, age 91, right hemisphere 1073.7
2256 Male, age 80, left hemisphere 1045.7
2516 Male, age 75, right hemisphere 710.5
2830 Female, age 67, right hemisphere 703.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

868.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 868.6
Samples: 181

Max nTPM: 2747.2
Min nTPM: 271.5
Std nTPM: 453.8
Median nTPM: 769.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2747.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2610.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2350.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2017.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1903.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1850.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1839.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1772.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1749.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1729.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1688.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1633.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1624.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1610.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1593.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1548.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1499.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1497.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1420.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1418.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1411.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1393.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1393.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1371.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1349.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1325.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1309.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1293.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 1277.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1262.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1250.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1244.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1242.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1225.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1223.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1186.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1183.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1169.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 1168.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1135.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1120.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1104.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1103.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1098.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1081.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1080.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1075.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1074.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1070.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1067.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1058.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1057.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1051.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1050.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1043.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1042.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1039.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1035.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1021.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1020.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1016.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1005.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1000.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 993.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 991.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 987.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 983.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 974.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 969.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 966.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 950.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 944.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 942.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 932.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 927.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 920.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 913.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 910.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 889.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 888.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 829.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 817.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 811.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 784.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 779.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 775.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 774.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 773.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 773.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 770.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 769.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 766.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 755.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 748.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 742.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 741.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 732.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 724.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 718.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 716.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 714.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 712.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 707.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 704.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 694.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 684.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 683.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 670.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 654.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 651.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 647.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 624.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 615.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 614.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 606.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 604.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 604.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 603.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 591.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 579.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 577.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 575.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 571.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 571.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 570.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 565.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 560.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 558.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 556.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 548.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 547.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 543.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 542.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 542.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 537.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 523.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 512.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 500.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 498.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 488.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 486.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 482.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 481.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 476.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 473.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 469.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 464.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 460.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 459.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 459.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 452.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 447.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 444.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 444.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 436.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 428.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 419.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 415.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 403.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 398.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 398.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 394.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 379.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 376.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 368.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 366.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 363.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 354.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 348.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 343.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 328.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 322.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 322.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 321.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 320.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 317.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 316.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 316.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 292.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 291.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 271.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1069.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1069.2
FF:10151-102I7 76 years, female 1069.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1316.5
Pig sample Sample description nTPM
Amygdala
nTPM: 1316.6
Samples: 4

Max nTPM: 1904.7
Min nTPM: 941.1
Sample A Female 1904.7
Sample B Female 941.1
Sample C Male 1290.4
Sample D Male 1130.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1001.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 1001.7
Samples: 4

Max nTPM: 1113.1
Min nTPM: 937.8
Sample A Male 985.5
Sample B Male 970.2
Sample C Female 1113.1
Sample D Female 937.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.7
184 Antisense, RP_Baylor_102654, Mouse strain C57BL/6J (56 days, male) 2.7

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