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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:301.9 nTPM
HPA Brain:722.3 nTPM
GTEx:301.9 nTPM
FANTOM5:405.1 Scaled Tags Per Million
Pig:664.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

722.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 548.2
2194 Female, age 79, both hemispheres 800.3
1981 Female, age 72, midline 521.5
2565 Male, age 75, midline 502.4
2816 Male, age 47, midline 497.3
2048 Male, age 55, midline 419.8
Cervical spinal cord, dorsal horn
nTPM: 722.3
2297 Male, age 75, both hemispheres 1138.6
2721 Male, age 90, both hemispheres 790.2
1877 Male, age 55, unknown 714.5
2069 Male, age 47, both hemispheres 671.3
2173 Female, age 72, unknown 587.6
2296 Male, age 66, both hemispheres 432.0
Cervical spinal cord, ventral horn
nTPM: 653.0
2820 Female, age 79, both hemispheres 1047.8
2068 Male, age 55, unknown 785.8
2480 Male, age 75, both hemispheres 690.5
2295 Male, age 66, both hemispheres 581.3
2809 Male, age 90, both hemispheres 479.9
2098 Female, age 72, unknown 333.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

301.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 301.9
Samples: 204

Max nTPM: 912.8
Min nTPM: 122.0
Std nTPM: 99.3
Median nTPM: 288.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 912.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 854.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 714.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 671.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 578.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 492.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 481.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 472.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 439.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 434.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 433.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 433.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 431.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 427.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 419.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 412.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 411.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 409.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 397.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 392.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 391.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 389.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 387.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 386.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 382.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 382.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 377.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 377.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 376.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 372.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 372.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 371.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 371.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 371.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 366.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 365.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 363.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 363.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 359.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 357.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 356.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 352.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 351.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 351.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 349.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 348.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 344.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 342.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 341.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 340.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 339.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 337.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 334.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 334.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 333.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 330.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 328.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 327.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 327.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 326.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 325.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 323.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 323.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 323.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 323.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 323.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 321.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 318.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 318.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 317.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 316.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 315.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 314.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 312.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 310.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 310.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 308.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 308.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 308.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 306.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 306.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 305.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 304.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 304.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 304.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 303.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 300.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 300.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 298.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 298.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 297.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 297.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 294.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 294.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 293.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 293.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 292.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 290.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 290.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 289.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 289.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 288.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 287.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 284.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 283.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 282.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 282.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 281.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 281.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 275.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 274.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 274.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 274.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 273.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 273.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 272.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 272.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 271.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 271.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 271.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 271.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 270.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 270.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 267.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 267.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 266.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 266.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 266.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 264.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 264.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 263.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 263.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 262.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 261.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 260.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 259.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 258.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 257.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 256.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 253.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 252.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 252.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 249.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 249.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 246.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 246.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 246.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 244.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 244.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 244.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 243.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 243.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 243.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 243.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 240.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 239.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 239.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 238.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 238.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 237.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 237.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 236.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 235.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 235.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 235.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 233.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 233.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 233.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 231.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 231.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 227.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 226.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 226.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 225.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 224.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 223.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 220.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 219.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 218.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 217.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 214.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 213.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 210.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 210.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 208.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 205.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 204.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 203.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 203.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 201.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 196.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 195.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 188.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 187.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 184.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 184.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 181.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 175.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 171.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 165.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 163.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 161.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 156.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 122.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

405.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 405.1
FF:10181-103D1 60 years, female 592.6
FF:10159-103A6 76 years, female 217.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

664.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 663.7
Samples: 4

Max nTPM: 1001.4
Min nTPM: 376.6
Sample A Female 1001.4
Sample B Female 488.7
Sample C Male 376.6
Sample D Male 788.2
Ventral spinal cord
nTPM: 664.9
Samples: 4

Max nTPM: 765.1
Min nTPM: 598.2
Sample A Female 765.1
Sample B Female 657.3
Sample C Male 638.9
Sample D Male 598.2

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