MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:487.6 nTPM
HPA Brain:826.2 nTPM
GTEx:487.6 nTPM
FANTOM5:170.5 Scaled Tags Per Million
Pig:1208.0 nTPM
Mouse:612.6 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 826.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 696.9
2019 Male, age 18, unknown 835.8
2666 Male, age 74, left hemisphere 833.7
1827 Male, age 72, unknown 799.1
2219 Male, age 76, both hemispheres 757.9
2586 Male, age 75, left hemisphere 748.9
2828 Female, age 72, unknown 647.1
2411 Female, age 72, unknown 623.5
1833 Male, age 53, unknown 598.1
1870 Female, age 42, unknown 579.6
1830 Male, age 51, unknown 545.2
Dorsal raphe nucleus
nTPM: 626.0
1828 Male, age 53, unknown 697.5
2298 Female, age 72, unknown 690.8
2047 Male, age 72, unknown 673.2
2750 Male, age 76, both hemispheres 657.1
2016 Female, age 72, unknown 411.1
Inferior colliculus
nTPM: 665.4
2849 Male, age 72, unknown 708.8
2097 Female, age 72, unknown 694.5
1848 Female, age 42, unknown 692.5
1890 Male, age 53, unknown 565.8
Median raphe nucleus
nTPM: 806.9
2220 Male, age 76, midline 806.9
Periaquaductal grey, anterior
nTPM: 701.4
1795 Male, age 51, unknown 789.1
1947 Male, age 18, unknown 677.0
2502 Female, age 75, unknown 638.0
Periaquaductal grey, dorsal
nTPM: 587.3
1840 Male, age 53, unknown 623.7
1831 Male, age 72, unknown 592.2
2464 Female, age 72, unknown 568.6
2850 Male, age 76, both hemispheres 564.8
Periaquaductal grey, lateral
nTPM: 487.3
2140 Male, age 76, both hemispheres 529.6
2053 Male, age 18, unknown 485.2
2272 Male, age 74, both hemispheres 447.0
Pretectal area
nTPM: 826.2
1817 Female, age 42, unknown 1249.1
1816 Male, age 51, unknown 1220.7
2007 Male, age 72, unknown 1216.9
1944 Female, age 72, unknown 1196.7
1815 Male, age 53, unknown 945.0
2667 Female, age 75, unknown 653.5
2224 Female, age 72, unknown 619.4
2825 Male, age 18, unknown 554.2
2407 Male, age 75, both hemispheres 546.3
2316 Male, age 76, right hemisphere 471.1
2273 Male, age 74, both hemispheres 415.7
Red nucleus
nTPM: 565.6
2785 Male, age 18, unknown 800.4
2584 Male, age 75, left hemisphere 698.1
2725 Female, age 75, unknown 645.2
1821 Female, age 72, unknown 611.7
2588 Male, age 74, left hemisphere 606.5
1954 Female, age 42, unknown 519.6
2503 Female, age 72, unknown 505.9
2227 Male, age 72, unknown 504.4
2769 Male, age 72, unknown 503.7
2823 Male, age 76, right hemisphere 488.2
1865 Male, age 51, unknown 460.5
1904 Male, age 53, unknown 443.1
Substantia nigra
nTPM: 754.3
1889 Female, age 72, unknown 1055.7
1941 Male, age 53, unknown 1005.7
1916 Female, age 42, unknown 966.6
2665 Male, age 74, both hemispheres 921.9
1851 Male, age 51, unknown 744.7
2590 Female, age 75, unknown 603.8
2583 Male, age 75, right hemisphere 587.3
2241 Male, age 72, unknown 572.8
2699 Male, age 18, unknown 544.1
2409 Female, age 72, unknown 540.2
Superior colliculus
nTPM: 713.0
2087 Female, age 72, unknown 995.2
2668 Female, age 75, unknown 924.5
1895 Male, age 76, right hemisphere 772.2
1796 Male, age 53, unknown 761.4
2261 Male, age 18, unknown 758.9
2664 Male, age 75, both hemispheres 716.2
1839 Male, age 51, unknown 649.3
1913 Female, age 42, unknown 553.5
2587 Male, age 74, left hemisphere 506.5
1995 Male, age 72, unknown 492.7
Ventral tegmental area
nTPM: 658.4
2218 Male, age 76, both hemispheres 809.6
1915 Female, age 42, unknown 714.5
2410 Female, age 72, unknown 708.3
2223 Female, age 72, unknown 656.4
1942 Male, age 51, unknown 574.7
2021 Male, age 53, unknown 487.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 487.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 487.6
Samples: 183

Max nTPM: 1900.6
Min nTPM: 153.3
Std nTPM: 303.7
Median nTPM: 382.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1900.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 1697.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1548.1
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 1500.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 1396.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1299.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 1258.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 1229.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1224.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1138.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 968.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 170.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 170.5
FF:10158-103A5 76 years, female 170.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1208.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 827.5
Samples: 4

Max nTPM: 1144.1
Min nTPM: 472.0
Sample A Female 1144.1
Sample B Female 601.9
Sample C Male 1091.8
Sample D Male 472.0
Midbrain
nTPM: 1100.6
Samples: 4

Max nTPM: 1617.7
Min nTPM: 733.6
Sample A Female 733.6
Sample B Female 768.7
Sample C Male 1617.7
Sample D Male 1282.2
Periaqueductal gray
nTPM: 772.5
Samples: 3

Max nTPM: 931.9
Min nTPM: 648.7
Sample B Female 736.9
Sample C Male 931.9
Sample D Male 648.7
Superior colliculi
nTPM: 1208.0
Samples: 4

Max nTPM: 1522.1
Min nTPM: 626.1
Sample A Female 1435.6
Sample B Female 626.1
Sample C Male 1522.1
Sample D Male 1248.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 612.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 612.7
Samples: 4

Max nTPM: 630.1
Min nTPM: 597.8
Sample A Male 630.1
Sample B Male 597.8
Sample C Female 605.7
Sample D Female 617.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
184 Antisense, RP_Baylor_102654, Mouse strain C57BL/6J (56 days, male) 0.9

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