MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.6 nTPM
HPA Brain:161.6 nTPM
GTEx:79.6 nTPM
FANTOM5:16.2 Scaled Tags Per Million
Pig:129.4 nTPM
Mouse:160.4 nTPM
Allen mouse:7.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 161.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 154.1
2019 Male, age 18, unknown 195.5
2586 Male, age 75, left hemisphere 183.0
2666 Male, age 74, left hemisphere 182.2
1827 Male, age 72, unknown 169.8
2219 Male, age 76, both hemispheres 155.2
2828 Female, age 72, unknown 143.3
1833 Male, age 53, unknown 131.0
2411 Female, age 72, unknown 129.4
1830 Male, age 51, unknown 127.2
1870 Female, age 42, unknown 124.4
Dorsal raphe nucleus
nTPM: 124.7
1828 Male, age 53, unknown 150.2
2750 Male, age 76, both hemispheres 130.3
2047 Male, age 72, unknown 128.6
2298 Female, age 72, unknown 111.3
2016 Female, age 72, unknown 103.1
Inferior colliculus
nTPM: 149.5
2097 Female, age 72, unknown 178.6
1890 Male, age 53, unknown 150.4
1848 Female, age 42, unknown 139.2
2849 Male, age 72, unknown 129.6
Median raphe nucleus
nTPM: 126.2
2220 Male, age 76, midline 126.2
Periaquaductal grey, anterior
nTPM: 154.9
2502 Female, age 75, unknown 161.4
1947 Male, age 18, unknown 158.0
1795 Male, age 51, unknown 145.2
Periaquaductal grey, dorsal
nTPM: 104.1
2464 Female, age 72, unknown 120.7
1831 Male, age 72, unknown 111.4
1840 Male, age 53, unknown 99.0
2850 Male, age 76, both hemispheres 85.4
Periaquaductal grey, lateral
nTPM: 106.0
2053 Male, age 18, unknown 118.4
2140 Male, age 76, both hemispheres 103.0
2272 Male, age 74, both hemispheres 96.5
Pretectal area
nTPM: 161.6
2007 Male, age 72, unknown 221.6
1944 Female, age 72, unknown 215.8
1817 Female, age 42, unknown 207.6
1815 Male, age 53, unknown 192.1
1816 Male, age 51, unknown 191.2
2667 Female, age 75, unknown 161.0
2407 Male, age 75, both hemispheres 157.5
2316 Male, age 76, right hemisphere 123.3
2224 Female, age 72, unknown 114.4
2825 Male, age 18, unknown 110.9
2273 Male, age 74, both hemispheres 82.4
Red nucleus
nTPM: 145.7
2785 Male, age 18, unknown 189.1
2584 Male, age 75, left hemisphere 175.1
2588 Male, age 74, left hemisphere 162.9
2823 Male, age 76, right hemisphere 149.6
1865 Male, age 51, unknown 145.4
1904 Male, age 53, unknown 140.2
2227 Male, age 72, unknown 138.9
2503 Female, age 72, unknown 138.9
2769 Male, age 72, unknown 137.2
1821 Female, age 72, unknown 135.6
1954 Female, age 42, unknown 124.4
2725 Female, age 75, unknown 110.5
Substantia nigra
nTPM: 156.2
2665 Male, age 74, both hemispheres 214.9
1889 Female, age 72, unknown 194.2
1916 Female, age 42, unknown 168.6
2583 Male, age 75, right hemisphere 161.4
1851 Male, age 51, unknown 161.0
1941 Male, age 53, unknown 154.0
2409 Female, age 72, unknown 145.8
2590 Female, age 75, unknown 126.2
2241 Male, age 72, unknown 123.2
2699 Male, age 18, unknown 112.6
Superior colliculus
nTPM: 156.2
2668 Female, age 75, unknown 223.8
2087 Female, age 72, unknown 187.8
1895 Male, age 76, right hemisphere 172.3
1796 Male, age 53, unknown 158.0
2261 Male, age 18, unknown 150.8
2664 Male, age 75, both hemispheres 147.8
1913 Female, age 42, unknown 139.8
1839 Male, age 51, unknown 136.2
1995 Male, age 72, unknown 132.8
2587 Male, age 74, left hemisphere 112.9
Ventral tegmental area
nTPM: 132.2
2410 Female, age 72, unknown 160.2
2218 Male, age 76, both hemispheres 150.2
1942 Male, age 51, unknown 142.9
1915 Female, age 42, unknown 131.1
2223 Female, age 72, unknown 106.1
2021 Male, age 53, unknown 102.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 79.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.6
Samples: 183

Max nTPM: 215.9
Min nTPM: 23.5
Std nTPM: 32.9
Median nTPM: 77.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 215.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 169.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 149.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 149.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 149.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 145.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 143.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 141.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 138.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 137.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 134.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.2
FF:10158-103A5 76 years, female 16.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 129.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 81.2
Samples: 4

Max nTPM: 99.4
Min nTPM: 59.2
Sample A Female 97.6
Sample B Female 59.2
Sample C Male 99.4
Sample D Male 68.4
Midbrain
nTPM: 116.4
Samples: 4

Max nTPM: 201.3
Min nTPM: 45.5
Sample A Female 45.5
Sample B Female 86.0
Sample C Male 201.3
Sample D Male 132.9
Periaqueductal gray
nTPM: 67.9
Samples: 3

Max nTPM: 78.5
Min nTPM: 54.1
Sample B Female 78.5
Sample C Male 71.1
Sample D Male 54.1
Superior colliculi
nTPM: 129.4
Samples: 4

Max nTPM: 175.1
Min nTPM: 93.0
Sample A Female 115.6
Sample B Female 93.0
Sample C Male 175.1
Sample D Male 133.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 160.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.4
Samples: 4

Max nTPM: 165.6
Min nTPM: 156.7
Sample A Male 165.6
Sample B Male 160.9
Sample C Female 156.7
Sample D Female 158.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
100144096 Antisense, RP_110407_03_B09, Mouse strain C57BL/6J (56 days, male) 7.6

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo