MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.2 nTPM
HPA Brain:69.4 nTPM
GTEx:65.2 nTPM
FANTOM5:233.2 Scaled Tags Per Million
Pig:164.5 nTPM
Mouse:24.8 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 69.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.0
2666 Male, age 74, left hemisphere 56.5
2828 Female, age 72, unknown 53.1
1830 Male, age 51, unknown 51.3
1870 Female, age 42, unknown 43.7
2019 Male, age 18, unknown 41.5
1833 Male, age 53, unknown 41.1
2411 Female, age 72, unknown 37.2
1827 Male, age 72, unknown 35.9
2586 Male, age 75, left hemisphere 28.8
2219 Male, age 76, both hemispheres 20.9
Dorsal raphe nucleus
nTPM: 49.8
2298 Female, age 72, unknown 62.8
2016 Female, age 72, unknown 61.4
1828 Male, age 53, unknown 48.8
2047 Male, age 72, unknown 39.5
2750 Male, age 76, both hemispheres 36.6
Inferior colliculus
nTPM: 40.0
2097 Female, age 72, unknown 45.0
1848 Female, age 42, unknown 39.8
1890 Male, age 53, unknown 38.5
2849 Male, age 72, unknown 36.7
Median raphe nucleus
nTPM: 40.9
2220 Male, age 76, midline 40.9
Periaquaductal grey, anterior
nTPM: 31.2
1795 Male, age 51, unknown 42.1
1947 Male, age 18, unknown 27.7
2502 Female, age 75, unknown 23.9
Periaquaductal grey, dorsal
nTPM: 54.8
1831 Male, age 72, unknown 67.0
2850 Male, age 76, both hemispheres 64.0
1840 Male, age 53, unknown 45.8
2464 Female, age 72, unknown 42.4
Periaquaductal grey, lateral
nTPM: 56.4
2140 Male, age 76, both hemispheres 61.0
2272 Male, age 74, both hemispheres 59.1
2053 Male, age 18, unknown 49.0
Pretectal area
nTPM: 42.8
2407 Male, age 75, both hemispheres 56.0
2316 Male, age 76, right hemisphere 52.8
2224 Female, age 72, unknown 52.3
2273 Male, age 74, both hemispheres 50.1
1817 Female, age 42, unknown 49.2
1815 Male, age 53, unknown 44.4
1944 Female, age 72, unknown 39.7
2825 Male, age 18, unknown 39.1
2007 Male, age 72, unknown 37.6
2667 Female, age 75, unknown 27.7
1816 Male, age 51, unknown 22.5
Red nucleus
nTPM: 46.2
2725 Female, age 75, unknown 64.1
1865 Male, age 51, unknown 59.3
2503 Female, age 72, unknown 53.4
1904 Male, age 53, unknown 48.6
2769 Male, age 72, unknown 48.1
2785 Male, age 18, unknown 47.8
2227 Male, age 72, unknown 46.7
1954 Female, age 42, unknown 41.9
2584 Male, age 75, left hemisphere 41.5
2823 Male, age 76, right hemisphere 40.5
1821 Female, age 72, unknown 37.2
2588 Male, age 74, left hemisphere 25.4
Substantia nigra
nTPM: 69.4
2590 Female, age 75, unknown 114.1
2699 Male, age 18, unknown 107.8
2665 Male, age 74, both hemispheres 82.4
2409 Female, age 72, unknown 69.9
1916 Female, age 42, unknown 65.4
2583 Male, age 75, right hemisphere 60.3
1851 Male, age 51, unknown 58.2
2241 Male, age 72, unknown 57.6
1941 Male, age 53, unknown 45.4
1889 Female, age 72, unknown 33.2
Superior colliculus
nTPM: 45.9
1913 Female, age 42, unknown 78.7
2587 Male, age 74, left hemisphere 59.3
1995 Male, age 72, unknown 58.4
2664 Male, age 75, both hemispheres 46.0
1796 Male, age 53, unknown 44.8
2087 Female, age 72, unknown 40.8
1839 Male, age 51, unknown 40.5
2668 Female, age 75, unknown 33.0
2261 Male, age 18, unknown 31.4
1895 Male, age 76, right hemisphere 25.9
Ventral tegmental area
nTPM: 56.4
2021 Male, age 53, unknown 78.3
1915 Female, age 42, unknown 61.5
2218 Male, age 76, both hemispheres 52.0
1942 Male, age 51, unknown 51.9
2410 Female, age 72, unknown 51.9
2223 Female, age 72, unknown 42.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.2
Samples: 183

Max nTPM: 366.1
Min nTPM: 4.6
Std nTPM: 56.6
Median nTPM: 51.1
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 366.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 308.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 261.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 251.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 250.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 250.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 225.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 176.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 173.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 169.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 166.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 233.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 233.2
FF:10158-103A5 76 years, female 233.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 164.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 159.0
Samples: 4

Max nTPM: 182.0
Min nTPM: 141.3
Sample A Female 158.3
Sample B Female 182.0
Sample C Male 141.3
Sample D Male 154.2
Midbrain
nTPM: 128.2
Samples: 4

Max nTPM: 196.8
Min nTPM: 50.7
Sample A Female 196.8
Sample B Female 186.9
Sample C Male 50.7
Sample D Male 78.4
Periaqueductal gray
nTPM: 164.5
Samples: 3

Max nTPM: 171.6
Min nTPM: 151.6
Sample B Female 170.3
Sample C Male 171.6
Sample D Male 151.6
Superior colliculi
nTPM: 97.2
Samples: 4

Max nTPM: 126.8
Min nTPM: 74.8
Sample A Female 126.8
Sample B Female 74.8
Sample C Male 78.7
Sample D Male 108.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 27.1
Min nTPM: 23.4
Sample A Male 27.1
Sample B Male 23.4
Sample C Female 24.4
Sample D Female 24.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
100145372 Antisense, RP_110519_02_F11, Mouse strain C57BL/6J (56 days, male) 0.0

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