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  • ARPC2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:132.2 nTPM
HPA Brain:72.4 nTPM
GTEx:132.2 nTPM
FANTOM5:143.3 Scaled Tags Per Million
Pig:164.1 nTPM
Mouse:243.2 nTPM
Allen mouse:12.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.4
Sample id Sample description nTPM
Amygdala
nTPM: 72.4
2514 Male, age 75, right hemisphere 83.7
1987 Female, age 91, left hemisphere 80.4
2695 Female, age 67, right hemisphere 70.0
2517 Female, age 94, left hemisphere 65.3
2814 Male, age 76, right hemisphere 62.7
Basal amygdala
nTPM: 65.4
2243 Female, age 91, right hemisphere 77.1
2110 Male, age 80, left hemisphere 67.3
2609 Male, age 75, right hemisphere 66.8
2685 Female, age 94, left hemisphere 66.6
1955 Male, age 76, both hemispheres 64.7
2827 Female, age 67, right hemisphere 50.0
Central amygdala
nTPM: 60.2
2826 Female, age 94, left hemisphere 66.1
2515 Male, age 75, right hemisphere 65.3
2239 Male, age 80, left hemisphere 64.0
1905 Male, age 76, both hemispheres 53.3
2701 Female, age 91, right hemisphere 52.1
Corticomedial amygdala
nTPM: 71.6
2242 Female, age 91, right hemisphere 89.5
2829 Male, age 80, left hemisphere 81.7
2428 Male, age 75, right hemisphere 74.9
2429 Female, age 94, left hemisphere 71.5
2240 Male, age 76, both hemispheres 65.7
2535 Female, age 67, right hemisphere 46.5
Lateral amygdala
nTPM: 57.6
1883 Male, age 76, both hemispheres 66.9
2534 Female, age 94, left hemisphere 65.9
2516 Male, age 75, right hemisphere 63.6
2256 Male, age 80, left hemisphere 55.1
2830 Female, age 67, right hemisphere 50.0
2255 Female, age 91, right hemisphere 44.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 132.2
Samples: 181

Max nTPM: 341.3
Min nTPM: 88.8
Std nTPM: 28.5
Median nTPM: 128.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 341.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 236.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 224.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 196.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 195.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 194.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 193.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 190.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 189.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 183.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 179.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 177.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 171.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 169.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 165.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 162.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 161.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 157.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 157.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 155.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 154.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 154.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 153.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 153.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 152.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 152.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 151.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 151.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 150.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 149.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 148.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 148.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 147.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 147.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 146.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 146.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 145.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 145.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 144.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 143.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 143.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 143.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 142.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 142.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 142.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 142.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 141.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 141.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 141.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 141.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 140.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 140.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 139.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 139.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 137.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 137.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 137.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 137.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 137.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 136.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 136.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 136.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 136.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 136.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 136.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 136.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 135.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 135.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 135.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 134.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 134.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 134.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 134.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 134.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 133.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 133.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 133.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 133.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 131.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 131.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 131.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 130.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 130.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 130.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 129.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 129.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 129.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 129.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 129.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 128.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 128.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 128.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 127.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 127.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 127.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 126.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 126.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 126.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 125.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 125.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 125.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 125.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 125.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 124.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 124.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 124.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 124.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 123.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 123.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 123.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 122.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 122.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 122.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 122.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 121.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 121.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 121.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 121.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 120.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 120.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 119.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 119.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 119.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 119.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 118.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 118.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 118.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 117.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 117.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 117.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 116.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 116.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 116.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 115.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 114.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 114.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 114.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 113.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 113.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 113.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 113.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 113.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 113.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 112.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 112.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 112.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 110.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 110.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 110.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 109.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 108.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 107.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 107.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 107.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 106.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 106.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 106.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 106.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 106.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 106.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 106.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 105.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 105.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 105.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 104.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 103.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 103.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 103.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 102.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 102.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 100.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 98.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 97.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 96.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 96.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 96.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 96.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 94.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 92.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 90.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 88.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

143.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 143.3
FF:10151-102I7 76 years, female 143.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.1
Pig sample Sample description nTPM
Amygdala
nTPM: 164.1
Samples: 4

Max nTPM: 217.8
Min nTPM: 136.9
Sample A Female 217.8
Sample B Female 162.0
Sample C Male 136.9
Sample D Male 139.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 243.2
Samples: 4

Max nTPM: 249.3
Min nTPM: 237.0
Sample A Male 237.0
Sample B Male 245.7
Sample C Female 249.3
Sample D Female 240.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.0
69526892 Antisense, RP_050421_01_H01, Mouse strain C57BL/6J (56 days, male) 12.0

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