MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:111.9 nTPM
HPA Brain:76.5 nTPM
GTEx:111.9 nTPM
FANTOM5:124.6 Scaled Tags Per Million
Pig:201.8 nTPM
Mouse:150.4 nTPM
Allen mouse:4.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 76.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.7
1870 Female, age 42, unknown 68.0
2666 Male, age 74, left hemisphere 65.9
1827 Male, age 72, unknown 61.0
2219 Male, age 76, both hemispheres 59.5
2828 Female, age 72, unknown 57.5
1833 Male, age 53, unknown 56.5
1830 Male, age 51, unknown 56.4
2411 Female, age 72, unknown 55.5
2586 Male, age 75, left hemisphere 53.5
2019 Male, age 18, unknown 53.0
Dorsal raphe nucleus
nTPM: 68.4
2298 Female, age 72, unknown 82.4
1828 Male, age 53, unknown 69.4
2047 Male, age 72, unknown 63.9
2750 Male, age 76, both hemispheres 63.4
2016 Female, age 72, unknown 63.0
Inferior colliculus
nTPM: 62.2
2097 Female, age 72, unknown 68.4
1848 Female, age 42, unknown 61.5
2849 Male, age 72, unknown 60.7
1890 Male, age 53, unknown 58.2
Median raphe nucleus
nTPM: 74.4
2220 Male, age 76, midline 74.4
Periaquaductal grey, anterior
nTPM: 65.1
2502 Female, age 75, unknown 66.1
1947 Male, age 18, unknown 65.4
1795 Male, age 51, unknown 63.8
Periaquaductal grey, dorsal
nTPM: 58.6
1840 Male, age 53, unknown 68.9
2850 Male, age 76, both hemispheres 61.2
1831 Male, age 72, unknown 55.9
2464 Female, age 72, unknown 48.4
Periaquaductal grey, lateral
nTPM: 58.5
2272 Male, age 74, both hemispheres 65.5
2053 Male, age 18, unknown 58.1
2140 Male, age 76, both hemispheres 51.8
Pretectal area
nTPM: 63.1
1817 Female, age 42, unknown 69.6
1816 Male, age 51, unknown 69.0
2224 Female, age 72, unknown 68.7
2825 Male, age 18, unknown 68.4
1944 Female, age 72, unknown 66.9
2007 Male, age 72, unknown 62.8
2273 Male, age 74, both hemispheres 61.8
1815 Male, age 53, unknown 61.6
2667 Female, age 75, unknown 56.5
2316 Male, age 76, right hemisphere 55.0
2407 Male, age 75, both hemispheres 54.1
Red nucleus
nTPM: 56.2
1821 Female, age 72, unknown 73.6
2725 Female, age 75, unknown 71.7
2503 Female, age 72, unknown 61.1
1954 Female, age 42, unknown 57.4
2769 Male, age 72, unknown 55.9
1865 Male, age 51, unknown 55.2
2227 Male, age 72, unknown 53.3
1904 Male, age 53, unknown 52.0
2785 Male, age 18, unknown 51.1
2823 Male, age 76, right hemisphere 50.4
2584 Male, age 75, left hemisphere 49.7
2588 Male, age 74, left hemisphere 42.5
Substantia nigra
nTPM: 76.5
1916 Female, age 42, unknown 98.2
2241 Male, age 72, unknown 95.8
1851 Male, age 51, unknown 86.7
2665 Male, age 74, both hemispheres 79.4
2699 Male, age 18, unknown 78.5
1941 Male, age 53, unknown 71.8
1889 Female, age 72, unknown 68.7
2583 Male, age 75, right hemisphere 63.2
2409 Female, age 72, unknown 61.5
2590 Female, age 75, unknown 61.0
Superior colliculus
nTPM: 57.8
2587 Male, age 74, left hemisphere 69.3
1796 Male, age 53, unknown 62.8
2261 Male, age 18, unknown 60.6
2668 Female, age 75, unknown 60.5
1839 Male, age 51, unknown 57.4
2087 Female, age 72, unknown 55.3
1895 Male, age 76, right hemisphere 54.1
2664 Male, age 75, both hemispheres 54.0
1913 Female, age 42, unknown 52.6
1995 Male, age 72, unknown 50.9
Ventral tegmental area
nTPM: 72.5
1915 Female, age 42, unknown 83.7
2223 Female, age 72, unknown 76.0
2218 Male, age 76, both hemispheres 73.9
2410 Female, age 72, unknown 71.0
2021 Male, age 53, unknown 69.1
1942 Male, age 51, unknown 60.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 111.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.9
Samples: 183

Max nTPM: 206.2
Min nTPM: 74.3
Std nTPM: 22.6
Median nTPM: 108.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 206.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 199.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 185.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 171.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 166.1
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 165.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 165.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 160.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 159.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 157.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 154.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 124.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 124.6
FF:10158-103A5 76 years, female 124.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 201.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 201.8
Samples: 4

Max nTPM: 234.8
Min nTPM: 165.2
Sample A Female 234.8
Sample B Female 204.4
Sample C Male 202.9
Sample D Male 165.2
Midbrain
nTPM: 188.8
Samples: 4

Max nTPM: 248.5
Min nTPM: 147.5
Sample A Female 248.5
Sample B Female 198.0
Sample C Male 147.5
Sample D Male 161.3
Periaqueductal gray
nTPM: 173.0
Samples: 3

Max nTPM: 192.2
Min nTPM: 162.9
Sample B Female 163.8
Sample C Male 192.2
Sample D Male 162.9
Superior colliculi
nTPM: 177.8
Samples: 4

Max nTPM: 216.6
Min nTPM: 155.6
Sample A Female 216.6
Sample B Female 161.6
Sample C Male 155.6
Sample D Male 177.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 150.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 150.4
Samples: 4

Max nTPM: 152.9
Min nTPM: 148.8
Sample A Male 150.1
Sample B Male 148.8
Sample C Female 152.9
Sample D Female 149.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
69526892 Antisense, RP_050421_01_H01, Mouse strain C57BL/6J (56 days, male) 4.3

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