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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
90.3
Sample id
Sample description
nTPM
Amygdala nTPM: 90.3
2695
Female, age 67, right hemisphere
104.2
2514
Male, age 75, right hemisphere
101.0
1987
Female, age 91, left hemisphere
87.1
2517
Female, age 94, left hemisphere
81.4
2814
Male, age 76, right hemisphere
77.7
Basal amygdala nTPM: 78.1
2827
Female, age 67, right hemisphere
107.8
2110
Male, age 80, left hemisphere
99.9
2609
Male, age 75, right hemisphere
82.5
2685
Female, age 94, left hemisphere
73.3
1955
Male, age 76, both hemispheres
54.7
2243
Female, age 91, right hemisphere
50.8
Central amygdala nTPM: 79.8
2826
Female, age 94, left hemisphere
126.5
2515
Male, age 75, right hemisphere
97.3
1905
Male, age 76, both hemispheres
61.7
2701
Female, age 91, right hemisphere
60.3
2239
Male, age 80, left hemisphere
53.0
Corticomedial amygdala nTPM: 64.8
2428
Male, age 75, right hemisphere
90.2
2829
Male, age 80, left hemisphere
80.2
2429
Female, age 94, left hemisphere
63.8
2240
Male, age 76, both hemispheres
57.2
2242
Female, age 91, right hemisphere
55.3
2535
Female, age 67, right hemisphere
41.9
Lateral amygdala nTPM: 88.2
2830
Female, age 67, right hemisphere
150.0
2516
Male, age 75, right hemisphere
113.8
2534
Female, age 94, left hemisphere
88.5
1883
Male, age 76, both hemispheres
66.4
2256
Male, age 80, left hemisphere
57.4
2255
Female, age 91, right hemisphere
53.0
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1369.5
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 1369.5
Samples: 181
Max nTPM: 4605.1
Min nTPM: 512.1
Std nTPM: 617.1
Median nTPM: 1236.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
4605.1
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
4587.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
3767.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
3285.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
3056.2
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
2880.5
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
2724.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
2662.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
2586.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
2449.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
2400.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
2263.2
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
2226.7
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
2184.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
2166.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
2098.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
2094.5
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
2059.6
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
1990.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
1970.7
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
1957.8
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
1919.0
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
1875.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
1873.9
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
1863.7
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
1854.8
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
1852.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
1790.8
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
1784.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
1755.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
1752.2
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
1715.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
1694.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
1669.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
1645.9
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
1627.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
1623.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
1611.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
1608.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
1601.4
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
1586.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
1579.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
1577.7
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
1558.4
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
1542.8
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
1532.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
1531.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
1531.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
1523.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
1517.2
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
1504.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
1489.5
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
1489.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
1483.3
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
1482.8
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
1476.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
1469.6
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
1469.1
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
1467.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
1453.0
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
1440.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
1433.6
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
1429.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
1411.9
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
1406.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
1404.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
1397.3
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
1385.5
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
1382.7
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
1365.3
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
1361.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
1359.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
1354.9
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
1354.7
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
1354.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
1335.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
1334.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
1327.0
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
1319.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
1315.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
1304.2
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
1283.6
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
1281.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
1263.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
1255.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
1249.2
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
1248.0
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
1244.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
1238.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
1237.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
1236.5
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
1233.9
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
1228.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
1219.4
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
1213.6
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
1211.3
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
1209.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
1205.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
1202.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
1194.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
1193.5
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
1166.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
1162.0
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
1161.2
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
1159.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
1144.8
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
1143.1
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
1136.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
1135.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
1127.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
1126.6
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
1126.6
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
1124.7
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
1122.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
1121.8
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
1117.4
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
1116.7
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
1112.1
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
1112.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
1108.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
1098.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
1089.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
1083.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
1082.5
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
1076.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
1064.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
1059.5
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
1055.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
1048.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
1047.1
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
1021.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
1006.7
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
995.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
994.1
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
993.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
988.3
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
982.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
976.8
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
961.5
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
953.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
948.1
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
947.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
945.8
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
944.7
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
941.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
936.3
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
914.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
913.3
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
907.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
899.6
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
897.1
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
896.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
895.7
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
891.2
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
881.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
863.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
861.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
849.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
849.2
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
837.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
829.3
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
825.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
823.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
814.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
809.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
796.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
776.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
764.2
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
763.6
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
755.2
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
752.5
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
704.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
655.6
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
651.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
645.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
632.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
623.8
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
618.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
601.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
558.8
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
512.1
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
