MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1256.4 nTPM
HPA Brain:104.2 nTPM
GTEx:1256.4 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:26.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 104.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.8
2411 Female, age 72, unknown 97.4
2666 Male, age 74, left hemisphere 89.9
1870 Female, age 42, unknown 85.3
1827 Male, age 72, unknown 75.3
2586 Male, age 75, left hemisphere 74.1
2828 Female, age 72, unknown 72.3
2019 Male, age 18, unknown 70.3
1830 Male, age 51, unknown 65.0
2219 Male, age 76, both hemispheres 61.3
1833 Male, age 53, unknown 47.0
Dorsal raphe nucleus
nTPM: 72.1
2298 Female, age 72, unknown 93.2
2016 Female, age 72, unknown 77.9
2750 Male, age 76, both hemispheres 72.0
2047 Male, age 72, unknown 67.4
1828 Male, age 53, unknown 49.9
Inferior colliculus
nTPM: 80.5
2097 Female, age 72, unknown 111.0
2849 Male, age 72, unknown 73.6
1890 Male, age 53, unknown 69.3
1848 Female, age 42, unknown 68.1
Median raphe nucleus
nTPM: 65.3
2220 Male, age 76, midline 65.3
Periaquaductal grey, anterior
nTPM: 80.7
2502 Female, age 75, unknown 93.3
1795 Male, age 51, unknown 79.8
1947 Male, age 18, unknown 69.1
Periaquaductal grey, dorsal
nTPM: 70.8
2464 Female, age 72, unknown 86.6
1831 Male, age 72, unknown 68.6
1840 Male, age 53, unknown 65.7
2850 Male, age 76, both hemispheres 62.3
Periaquaductal grey, lateral
nTPM: 62.9
2053 Male, age 18, unknown 77.0
2140 Male, age 76, both hemispheres 61.5
2272 Male, age 74, both hemispheres 50.3
Pretectal area
nTPM: 73.1
1816 Male, age 51, unknown 101.2
2316 Male, age 76, right hemisphere 79.6
2224 Female, age 72, unknown 78.5
2825 Male, age 18, unknown 73.7
2273 Male, age 74, both hemispheres 73.1
1817 Female, age 42, unknown 70.8
2667 Female, age 75, unknown 70.1
2007 Male, age 72, unknown 68.7
1944 Female, age 72, unknown 63.6
1815 Male, age 53, unknown 63.0
2407 Male, age 75, both hemispheres 61.9
Red nucleus
nTPM: 76.5
2503 Female, age 72, unknown 93.3
1821 Female, age 72, unknown 92.5
1865 Male, age 51, unknown 86.8
2769 Male, age 72, unknown 79.6
2584 Male, age 75, left hemisphere 79.0
2227 Male, age 72, unknown 76.1
2785 Male, age 18, unknown 74.1
2588 Male, age 74, left hemisphere 73.6
1954 Female, age 42, unknown 69.6
2725 Female, age 75, unknown 67.1
2823 Male, age 76, right hemisphere 63.5
1904 Male, age 53, unknown 62.7
Substantia nigra
nTPM: 87.1
1851 Male, age 51, unknown 113.6
2409 Female, age 72, unknown 110.1
2241 Male, age 72, unknown 106.6
2665 Male, age 74, both hemispheres 96.0
2699 Male, age 18, unknown 92.7
1916 Female, age 42, unknown 82.0
2590 Female, age 75, unknown 78.6
1889 Female, age 72, unknown 73.5
2583 Male, age 75, right hemisphere 63.6
1941 Male, age 53, unknown 54.6
Superior colliculus
nTPM: 85.0
1796 Male, age 53, unknown 147.9
2587 Male, age 74, left hemisphere 118.0
2668 Female, age 75, unknown 88.8
1913 Female, age 42, unknown 76.7
1895 Male, age 76, right hemisphere 76.0
2261 Male, age 18, unknown 72.7
1995 Male, age 72, unknown 72.1
2664 Male, age 75, both hemispheres 69.2
2087 Female, age 72, unknown 65.3
1839 Male, age 51, unknown 62.8
Ventral tegmental area
nTPM: 104.2
2021 Male, age 53, unknown 273.0
1915 Female, age 42, unknown 89.3
2223 Female, age 72, unknown 86.5
2218 Male, age 76, both hemispheres 61.4
1942 Male, age 51, unknown 59.1
2410 Female, age 72, unknown 55.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1256.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1256.4
Samples: 183

Max nTPM: 3489.0
Min nTPM: 507.5
Std nTPM: 532.9
Median nTPM: 1152.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 3489.0
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 3155.2
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 2980.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2928.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2828.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2659.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 2535.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2534.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2358.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2350.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2303.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.4
Samples: 4

Max nTPM: 33.2
Min nTPM: 21.7
Sample A Female 33.2
Sample B Female 27.6
Sample C Male 22.9
Sample D Male 21.7
Midbrain
nTPM: 26.3
Samples: 4

Max nTPM: 35.6
Min nTPM: 18.9
Sample A Female 27.3
Sample B Female 35.6
Sample C Male 18.9
Sample D Male 23.2
Periaqueductal gray
nTPM: 25.0
Samples: 3

Max nTPM: 26.1
Min nTPM: 23.4
Sample B Female 23.4
Sample C Male 25.6
Sample D Male 26.1
Superior colliculi
nTPM: 25.8
Samples: 4

Max nTPM: 28.3
Min nTPM: 23.3
Sample A Female 28.3
Sample B Female 26.5
Sample C Male 25.0
Sample D Male 23.3

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