A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
91.7
nTPM
Monaco:
1850.0
nTPM
Schmiedel:
37.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.7
HPA sample
nTPM
Memory B-cell nTPM: 91.7
Samples: 6
Max nTPM: 163.7
Min nTPM: 34.4
P10809_1017
163.7
P10809_1025
100.8
P10809_1044
34.4
P10809_1063
81.2
P10809_1092
96.7
P10809_1105
73.6
Naive B-cell nTPM: 60.9
Samples: 6
Max nTPM: 79.9
Min nTPM: 36.8
P10809_1011
68.7
P10809_1029
65.0
P10809_1048
36.8
P10809_1067
57.9
P10809_1091
79.9
P10809_1104
57.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1850.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 267.4
Samples: 4
Max nTPM: 440.4
Min nTPM: 156.9
RHH5310_R3677
440.4
RHH5218_R3590
156.9
RHH5247_R3619
230.4
RHH5276_R3648
241.9
Naive B-cell nTPM: 178.9
Samples: 4
Max nTPM: 243.3
Min nTPM: 144.7
RHH5308_R3675
176.9
RHH5216_R3588
243.3
RHH5245_R3617
150.6
RHH5274_R3646
144.7
Non-switched memory B-cell nTPM: 213.1
Samples: 4
Max nTPM: 252.2
Min nTPM: 179.4
RHH5309_R3676
208.5
RHH5217_R3589
212.2
RHH5246_R3618
252.2
RHH5275_R3647
179.4
Plasmablast nTPM: 1850.0
Samples: 4
Max nTPM: 2082.7
Min nTPM: 1670.9
RHH5312_R3679
2082.7
RHH5220_R3592
1925.9
RHH5249_R3621
1670.9
RHH5278_R3650
1720.5
Switched memory B-cell nTPM: 217.2
Samples: 4
Max nTPM: 247.9
Min nTPM: 178.8
RHH5311_R3678
247.9
RHH5219_R3591
216.8
RHH5248_R3620
225.2
RHH5277_R3649
178.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.1
Schmiedel sample id
TPM
Naive B-cell TPM: 37.1
Samples: 91
Max TPM: 48.8
Min TPM: 28.6
B_CELL_NAIVE_1
48.8
B_CELL_NAIVE_2
47.8
B_CELL_NAIVE_3
45.6
B_CELL_NAIVE_4
45.5
B_CELL_NAIVE_5
45.4
B_CELL_NAIVE_6
44.3
B_CELL_NAIVE_7
43.2
B_CELL_NAIVE_8
42.3
B_CELL_NAIVE_9
42.2
B_CELL_NAIVE_10
42.1
B_CELL_NAIVE_11
41.9
B_CELL_NAIVE_12
41.8
B_CELL_NAIVE_13
41.5
B_CELL_NAIVE_14
41.3
B_CELL_NAIVE_15
41.2
B_CELL_NAIVE_16
41.2
B_CELL_NAIVE_17
40.7
B_CELL_NAIVE_18
40.6
B_CELL_NAIVE_19
40.4
B_CELL_NAIVE_20
40.4
B_CELL_NAIVE_21
40.1
B_CELL_NAIVE_22
40.0
B_CELL_NAIVE_23
39.6
B_CELL_NAIVE_24
39.6
B_CELL_NAIVE_25
39.5
B_CELL_NAIVE_26
39.4
B_CELL_NAIVE_27
39.0
B_CELL_NAIVE_28
38.7
B_CELL_NAIVE_29
38.6
B_CELL_NAIVE_30
38.5
B_CELL_NAIVE_31
38.5
B_CELL_NAIVE_32
38.5
B_CELL_NAIVE_33
38.4
B_CELL_NAIVE_34
38.4
B_CELL_NAIVE_35
37.9
B_CELL_NAIVE_36
37.5
B_CELL_NAIVE_37
37.3
B_CELL_NAIVE_38
37.1
B_CELL_NAIVE_39
37.1
B_CELL_NAIVE_40
37.1
B_CELL_NAIVE_41
37.0
B_CELL_NAIVE_42
36.9
B_CELL_NAIVE_43
36.9
B_CELL_NAIVE_44
36.8
B_CELL_NAIVE_45
36.8
B_CELL_NAIVE_46
36.6
B_CELL_NAIVE_47
36.5
B_CELL_NAIVE_48
36.4
B_CELL_NAIVE_49
36.3
B_CELL_NAIVE_50
36.3
B_CELL_NAIVE_51
36.2
B_CELL_NAIVE_52
36.1
B_CELL_NAIVE_53
36.0
B_CELL_NAIVE_54
35.9
B_CELL_NAIVE_55
35.8
B_CELL_NAIVE_56
35.5
B_CELL_NAIVE_57
35.4
B_CELL_NAIVE_58
35.3
B_CELL_NAIVE_59
35.3
B_CELL_NAIVE_60
35.2
B_CELL_NAIVE_61
35.1
B_CELL_NAIVE_62
35.1
B_CELL_NAIVE_63
34.9
B_CELL_NAIVE_64
34.8
B_CELL_NAIVE_65
34.6
B_CELL_NAIVE_66
34.5
B_CELL_NAIVE_67
34.4
B_CELL_NAIVE_68
34.4
B_CELL_NAIVE_69
34.3
B_CELL_NAIVE_70
34.2
B_CELL_NAIVE_71
34.1
B_CELL_NAIVE_72
33.8
B_CELL_NAIVE_73
33.8
B_CELL_NAIVE_74
33.7
B_CELL_NAIVE_75
33.5
B_CELL_NAIVE_76
33.4
B_CELL_NAIVE_77
33.4
B_CELL_NAIVE_78
33.4
B_CELL_NAIVE_79
33.4
B_CELL_NAIVE_80
33.1
B_CELL_NAIVE_81
33.1
B_CELL_NAIVE_82
32.6
B_CELL_NAIVE_83
32.6
B_CELL_NAIVE_84
32.0
B_CELL_NAIVE_85
32.0
B_CELL_NAIVE_86
31.7
B_CELL_NAIVE_87
31.1
B_CELL_NAIVE_88
30.4
B_CELL_NAIVE_89
30.2
B_CELL_NAIVE_90
29.8
B_CELL_NAIVE_91
28.6
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The Human Protein Atlas project is funded
