A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
171.7
nTPM
Monaco:
415.5
nTPM
Schmiedel:
156.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
171.7
HPA sample
nTPM
Classical monocyte nTPM: 171.7
Samples: 6
Max nTPM: 341.1
Min nTPM: 120.1
P10809_1003
341.1
P10809_1020
175.0
P10809_1039
136.0
P10809_1058
128.4
P10809_1080
129.4
P10809_1107
120.1
Intermediate monocyte nTPM: 147.1
Samples: 6
Max nTPM: 185.0
Min nTPM: 113.6
P10809_1004
185.0
P10809_1023
142.9
P10809_1042
168.3
P10809_1061
157.0
P10809_1081
115.7
P10809_1108
113.6
Non-classical monocyte nTPM: 160.1
Samples: 5
Max nTPM: 220.0
Min nTPM: 103.8
P10809_1005
183.8
P10809_1053
161.2
P10809_1072
220.0
P10809_1082
103.8
P10809_1109
131.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
415.5
Monaco sample
nTPM
Classical monocyte nTPM: 415.5
Samples: 4
Max nTPM: 435.5
Min nTPM: 365.6
RHH5313_R3680
435.5
RHH5221_R3593
431.7
RHH5250_R3622
429.0
RHH5279_R3651
365.6
Intermediate monocyte nTPM: 349.1
Samples: 4
Max nTPM: 358.5
Min nTPM: 335.4
RHH5314_R3681
348.9
RHH5222_R3594
358.5
RHH5251_R3623
335.4
RHH5280_R3652
353.6
Non-classical monocyte nTPM: 380.3
Samples: 4
Max nTPM: 458.5
Min nTPM: 340.4
RHH5315_R3682
458.5
RHH5223_R3595
354.4
RHH5252_R3624
367.9
RHH5281_R3653
340.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
156.1
Schmiedel sample id
TPM
Classical monocyte TPM: 156.1
Samples: 91
Max TPM: 195.1
Min TPM: 127.5
MONOCYTES_1
195.1
MONOCYTES_2
185.4
MONOCYTES_3
184.6
MONOCYTES_4
183.8
MONOCYTES_5
178.5
MONOCYTES_6
176.7
MONOCYTES_7
175.0
MONOCYTES_8
174.5
MONOCYTES_9
174.1
MONOCYTES_10
173.9
MONOCYTES_11
173.7
MONOCYTES_12
173.2
MONOCYTES_13
171.6
MONOCYTES_14
171.5
MONOCYTES_15
170.5
MONOCYTES_16
169.3
MONOCYTES_17
169.2
MONOCYTES_18
169.0
MONOCYTES_19
168.6
MONOCYTES_20
168.2
MONOCYTES_21
168.2
MONOCYTES_22
166.9
MONOCYTES_23
166.5
MONOCYTES_24
166.4
MONOCYTES_25
166.0
MONOCYTES_26
165.5
MONOCYTES_27
165.0
MONOCYTES_28
165.0
MONOCYTES_29
163.8
MONOCYTES_30
163.2
MONOCYTES_31
162.8
MONOCYTES_32
162.3
MONOCYTES_33
162.0
MONOCYTES_34
162.0
MONOCYTES_35
160.9
MONOCYTES_36
160.7
MONOCYTES_37
160.1
MONOCYTES_38
159.5
MONOCYTES_39
159.0
MONOCYTES_40
158.5
MONOCYTES_41
158.3
MONOCYTES_42
158.1
MONOCYTES_43
157.3
MONOCYTES_44
157.0
MONOCYTES_45
156.9
MONOCYTES_46
155.9
MONOCYTES_47
155.6
MONOCYTES_48
155.3
MONOCYTES_49
155.2
MONOCYTES_50
155.1
MONOCYTES_51
155.1
MONOCYTES_52
154.2
MONOCYTES_53
154.2
MONOCYTES_54
154.2
MONOCYTES_55
154.0
MONOCYTES_56
152.8
MONOCYTES_57
152.6
MONOCYTES_58
151.6
MONOCYTES_59
151.5
MONOCYTES_60
150.8
MONOCYTES_61
150.3
MONOCYTES_62
148.7
MONOCYTES_63
147.8
MONOCYTES_64
147.2
MONOCYTES_65
147.0
MONOCYTES_66
146.4
MONOCYTES_67
146.1
MONOCYTES_68
144.8
MONOCYTES_69
144.1
MONOCYTES_70
143.5
MONOCYTES_71
143.4
MONOCYTES_72
142.9
MONOCYTES_73
142.8
MONOCYTES_74
142.7
MONOCYTES_75
142.6
MONOCYTES_76
142.0
MONOCYTES_77
141.1
MONOCYTES_78
139.7
MONOCYTES_79
139.6
MONOCYTES_80
138.4
MONOCYTES_81
137.9
MONOCYTES_82
137.6
MONOCYTES_83
136.4
MONOCYTES_84
136.0
MONOCYTES_85
131.7
MONOCYTES_86
131.3
MONOCYTES_87
129.7
MONOCYTES_88
129.6
MONOCYTES_89
128.4
MONOCYTES_90
127.8
MONOCYTES_91
127.5
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Non-classical monocyte TPM: 132.2
Samples: 90
Max TPM: 159.4
Min TPM: 108.0
M2_1
159.4
M2_2
156.0
M2_3
154.0
M2_4
153.6
M2_5
152.2
M2_6
150.3
M2_7
150.1
M2_8
148.9
M2_9
148.7
M2_10
147.2
M2_11
146.3
M2_12
146.0
M2_13
144.8
M2_14
144.4
M2_15
144.2
M2_16
143.5
M2_17
142.6
M2_18
142.1
M2_19
141.2
M2_20
141.2
M2_21
139.8
M2_22
139.0
M2_23
138.5
M2_24
138.4
M2_25
138.4
M2_26
138.3
M2_27
138.0
M2_28
137.9
M2_29
137.9
M2_30
137.4
M2_31
137.0
M2_32
136.9
M2_33
136.7
M2_34
136.5
M2_35
136.4
M2_36
134.9
M2_37
134.5
M2_38
134.1
M2_39
133.8
M2_40
133.7
M2_41
133.2
M2_42
133.0
M2_43
132.3
M2_44
130.8
M2_45
130.8
M2_46
130.8
M2_47
129.8
M2_48
129.7
M2_49
129.2
M2_50
129.2
M2_51
128.8
M2_52
128.3
M2_53
128.2
M2_54
128.1
M2_55
128.1
M2_56
127.9
M2_57
127.7
M2_58
127.6
M2_59
126.6
M2_60
126.0
M2_61
125.8
M2_62
125.8
M2_63
125.6
M2_64
125.5
M2_65
125.2
M2_66
124.6
M2_67
124.3
M2_68
123.9
M2_69
123.8
M2_70
123.4
M2_71
123.1
M2_72
123.0
M2_73
123.0
M2_74
122.8
M2_75
122.7
M2_76
122.6
M2_77
120.9
M2_78
120.4
M2_79
120.4
M2_80
120.3
M2_81
120.0
M2_82
118.0
M2_83
117.7
M2_84
116.3
M2_85
116.2
M2_86
114.7
M2_87
113.8
M2_88
112.7
M2_89
112.5
M2_90
108.0
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