A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
90.4
nTPM
Monaco:
326.8
nTPM
Schmiedel:
111.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.4
HPA sample
nTPM
NK-cell nTPM: 90.5
Samples: 6
Max nTPM: 106.9
Min nTPM: 54.9
P10809_1013
105.6
P10809_1033
106.9
P10809_1052
102.6
P10809_1071
89.7
P10809_1093
54.9
P10809_1103
83.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
326.8
Monaco sample
nTPM
NK-cell nTPM: 326.8
Samples: 4
Max nTPM: 334.7
Min nTPM: 317.6
RHH5316_R3683
317.6
RHH5224_R3596
334.7
RHH5253_R3625
333.5
RHH5282_R3654
321.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
111.8
Schmiedel sample id
TPM
NK-cell TPM: 111.8
Samples: 90
Max TPM: 153.2
Min TPM: 80.6
NK_1
153.2
NK_2
148.6
NK_3
144.8
NK_4
144.2
NK_5
142.1
NK_6
141.3
NK_7
138.1
NK_8
136.4
NK_9
136.1
NK_10
133.4
NK_11
131.7
NK_12
130.3
NK_13
128.8
NK_14
128.4
NK_15
128.3
NK_16
128.2
NK_17
126.6
NK_18
126.5
NK_19
126.5
NK_20
126.1
NK_21
125.9
NK_22
124.8
NK_23
123.7
NK_24
123.6
NK_25
122.9
NK_26
121.6
NK_27
121.5
NK_28
121.2
NK_29
120.4
NK_30
119.6
NK_31
119.5
NK_32
119.0
NK_33
118.1
NK_34
117.2
NK_35
117.0
NK_36
116.5
NK_37
115.9
NK_38
115.8
NK_39
115.6
NK_40
114.9
NK_41
114.0
NK_42
113.6
NK_43
112.7
NK_44
112.1
NK_45
112.0
NK_46
111.3
NK_47
111.2
NK_48
111.1
NK_49
109.9
NK_50
109.4
NK_51
106.4
NK_52
106.3
NK_53
104.9
NK_54
104.4
NK_55
104.3
NK_56
104.2
NK_57
104.0
NK_58
104.0
NK_59
103.7
NK_60
102.3
NK_61
101.6
NK_62
100.7
NK_63
100.6
NK_64
100.0
NK_65
100.0
NK_66
99.7
NK_67
99.0
NK_68
98.6
NK_69
98.4
NK_70
98.1
NK_71
97.8
NK_72
95.7
NK_73
94.9
NK_74
93.9
NK_75
93.4
NK_76
93.0
NK_77
92.7
NK_78
92.0
NK_79
91.2
NK_80
91.1
NK_81
90.9
NK_82
89.2
NK_83
89.1
NK_84
88.9
NK_85
87.9
NK_86
87.1
NK_87
86.6
NK_88
86.0
NK_89
85.4
NK_90
80.6
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