MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.4 nTPM
HPA Brain:16.3 nTPM
GTEx:33.4 nTPM
FANTOM5:195.3 Scaled Tags Per Million
Pig:37.8 nTPM
Mouse:76.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.9
2411 Female, age 72, unknown 17.0
1870 Female, age 42, unknown 16.5
1830 Male, age 51, unknown 15.9
1833 Male, age 53, unknown 15.0
2828 Female, age 72, unknown 14.7
1827 Male, age 72, unknown 13.9
2019 Male, age 18, unknown 13.1
2219 Male, age 76, both hemispheres 12.9
2666 Male, age 74, left hemisphere 10.2
2586 Male, age 75, left hemisphere 10.1
Dorsal raphe nucleus
nTPM: 15.8
2750 Male, age 76, both hemispheres 17.5
2016 Female, age 72, unknown 16.1
2047 Male, age 72, unknown 15.8
2298 Female, age 72, unknown 15.2
1828 Male, age 53, unknown 14.2
Inferior colliculus
nTPM: 15.6
1848 Female, age 42, unknown 16.9
2849 Male, age 72, unknown 15.7
1890 Male, age 53, unknown 15.6
2097 Female, age 72, unknown 14.2
Median raphe nucleus
nTPM: 14.9
2220 Male, age 76, midline 14.9
Periaquaductal grey, anterior
nTPM: 13.3
1947 Male, age 18, unknown 14.2
2502 Female, age 75, unknown 13.3
1795 Male, age 51, unknown 12.4
Periaquaductal grey, dorsal
nTPM: 15.9
2850 Male, age 76, both hemispheres 17.8
1840 Male, age 53, unknown 16.5
2464 Female, age 72, unknown 16.4
1831 Male, age 72, unknown 13.0
Periaquaductal grey, lateral
nTPM: 16.3
2140 Male, age 76, both hemispheres 17.9
2053 Male, age 18, unknown 15.8
2272 Male, age 74, both hemispheres 15.3
Pretectal area
nTPM: 14.2
2273 Male, age 74, both hemispheres 17.0
2667 Female, age 75, unknown 17.0
2316 Male, age 76, right hemisphere 16.9
2825 Male, age 18, unknown 15.4
2224 Female, age 72, unknown 14.9
2407 Male, age 75, both hemispheres 13.4
1944 Female, age 72, unknown 13.3
1817 Female, age 42, unknown 12.7
1816 Male, age 51, unknown 12.6
1815 Male, age 53, unknown 12.3
2007 Male, age 72, unknown 10.4
Red nucleus
nTPM: 16.3
2227 Male, age 72, unknown 19.0
2823 Male, age 76, right hemisphere 19.0
1865 Male, age 51, unknown 18.9
1821 Female, age 72, unknown 18.8
2769 Male, age 72, unknown 18.3
1954 Female, age 42, unknown 17.7
1904 Male, age 53, unknown 17.2
2503 Female, age 72, unknown 16.4
2725 Female, age 75, unknown 13.7
2785 Male, age 18, unknown 12.8
2588 Male, age 74, left hemisphere 12.5
2584 Male, age 75, left hemisphere 11.7
Substantia nigra
nTPM: 14.1
2699 Male, age 18, unknown 18.0
1889 Female, age 72, unknown 14.9
1851 Male, age 51, unknown 14.7
1916 Female, age 42, unknown 14.2
2241 Male, age 72, unknown 13.6
1941 Male, age 53, unknown 13.5
2590 Female, age 75, unknown 13.4
2409 Female, age 72, unknown 13.3
2665 Male, age 74, both hemispheres 13.0
2583 Male, age 75, right hemisphere 12.1
Superior colliculus
nTPM: 14.4
1995 Male, age 72, unknown 17.5
1913 Female, age 42, unknown 16.7
1895 Male, age 76, right hemisphere 14.6
2587 Male, age 74, left hemisphere 14.6
2668 Female, age 75, unknown 14.6
1796 Male, age 53, unknown 14.3
2087 Female, age 72, unknown 13.7
2261 Male, age 18, unknown 13.1
2664 Male, age 75, both hemispheres 12.9
1839 Male, age 51, unknown 12.5
Ventral tegmental area
nTPM: 16.3
2223 Female, age 72, unknown 21.0
2021 Male, age 53, unknown 17.4
1942 Male, age 51, unknown 15.5
2218 Male, age 76, both hemispheres 15.5
2410 Female, age 72, unknown 15.4
1915 Female, age 42, unknown 13.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 33.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.4
Samples: 183

Max nTPM: 89.4
Min nTPM: 6.0
Std nTPM: 16.5
Median nTPM: 29.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 89.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 88.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 87.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 84.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 81.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 81.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 77.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 76.5
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 76.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 76.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 67.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 195.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 195.3
FF:10158-103A5 76 years, female 195.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.4
Samples: 4

Max nTPM: 38.8
Min nTPM: 27.1
Sample A Female 38.8
Sample B Female 33.3
Sample C Male 27.1
Sample D Male 38.4
Midbrain
nTPM: 37.8
Samples: 4

Max nTPM: 70.1
Min nTPM: 21.3
Sample A Female 70.1
Sample B Female 38.3
Sample C Male 21.3
Sample D Male 21.3
Periaqueductal gray
nTPM: 33.1
Samples: 3

Max nTPM: 38.4
Min nTPM: 29.6
Sample B Female 38.4
Sample C Male 31.3
Sample D Male 29.6
Superior colliculi
nTPM: 23.4
Samples: 4

Max nTPM: 28.9
Min nTPM: 12.8
Sample A Female 28.9
Sample B Female 12.8
Sample C Male 24.9
Sample D Male 27.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 76.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.7
Samples: 4

Max nTPM: 86.4
Min nTPM: 64.5
Sample A Male 71.6
Sample B Male 64.5
Sample C Female 86.4
Sample D Female 84.3

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