On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
261.1
nTPM
HPA Brain:
307.1
nTPM
GTEx:
261.1
nTPM
FANTOM5:
330.2
Scaled Tags Per Million
Macaque:
111.5
nTPM
Mouse:
107.5
nTPM
Rat:
57.3
nTPM
Pig:
90.7
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
307.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 284.2
2586
Male, age 75, left hemisphere
650.6
2828
Female, age 72, unknown
337.8
2666
Male, age 74, left hemisphere
305.9
1827
Male, age 72, unknown
250.1
1870
Female, age 42, unknown
243.3
1833
Male, age 53, unknown
231.1
1830
Male, age 51, unknown
222.1
2411
Female, age 72, unknown
214.7
2219
Male, age 76, both hemispheres
199.3
2019
Male, age 18, unknown
187.0
Dorsal raphe nucleus nTPM: 307.1
2016
Female, age 72, unknown
361.2
2047
Male, age 72, unknown
351.6
1828
Male, age 53, unknown
319.2
2750
Male, age 76, both hemispheres
256.7
2298
Female, age 72, unknown
246.6
Inferior colliculus nTPM: 297.0
1848
Female, age 42, unknown
316.6
2849
Male, age 72, unknown
304.2
1890
Male, age 53, unknown
285.7
2097
Female, age 72, unknown
281.4
Median raphe nucleus nTPM: 262.6
2220
Male, age 76, midline
262.6
Periaquaductal grey, anterior nTPM: 296.6
2502
Female, age 75, unknown
325.0
1795
Male, age 51, unknown
293.0
1947
Male, age 18, unknown
271.7
Periaquaductal grey, dorsal nTPM: 293.2
1840
Male, age 53, unknown
356.4
2850
Male, age 76, both hemispheres
292.6
2464
Female, age 72, unknown
290.0
1831
Male, age 72, unknown
233.8
Periaquaductal grey, lateral nTPM: 285.7
2053
Male, age 18, unknown
341.3
2140
Male, age 76, both hemispheres
301.3
2272
Male, age 74, both hemispheres
214.4
Pretectal area nTPM: 264.0
1817
Female, age 42, unknown
341.4
2825
Male, age 18, unknown
317.6
1944
Female, age 72, unknown
317.4
1816
Male, age 51, unknown
293.7
1815
Male, age 53, unknown
257.0
2007
Male, age 72, unknown
256.8
2316
Male, age 76, right hemisphere
255.8
2667
Female, age 75, unknown
233.1
2224
Female, age 72, unknown
219.3
2407
Male, age 75, both hemispheres
215.6
2273
Male, age 74, both hemispheres
196.8
Red nucleus nTPM: 303.8
2503
Female, age 72, unknown
361.5
2588
Male, age 74, left hemisphere
345.3
2227
Male, age 72, unknown
340.1
2769
Male, age 72, unknown
331.7
1954
Female, age 42, unknown
307.0
2725
Female, age 75, unknown
305.6
2584
Male, age 75, left hemisphere
305.5
1821
Female, age 72, unknown
297.9
2823
Male, age 76, right hemisphere
296.1
1865
Male, age 51, unknown
282.7
1904
Male, age 53, unknown
257.9
2785
Male, age 18, unknown
214.6
Substantia nigra nTPM: 293.9
2699
Male, age 18, unknown
375.9
2583
Male, age 75, right hemisphere
339.9
1941
Male, age 53, unknown
317.2
1916
Female, age 42, unknown
313.8
1889
Female, age 72, unknown
287.8
2241
Male, age 72, unknown
278.9
1851
Male, age 51, unknown
268.0
2665
Male, age 74, both hemispheres
266.9
2409
Female, age 72, unknown
246.3
2590
Female, age 75, unknown
243.9
Superior colliculus nTPM: 264.1
2668
Female, age 75, unknown
313.5
2664
Male, age 75, both hemispheres
296.6
2261
Male, age 18, unknown
295.5
2087
Female, age 72, unknown
284.6
1796
Male, age 53, unknown
272.0
1839
Male, age 51, unknown
255.5
1995
Male, age 72, unknown
246.3
2587
Male, age 74, left hemisphere
235.2
1913
Female, age 42, unknown
229.3
1895
Male, age 76, right hemisphere
213.0
Ventral tegmental area nTPM: 267.5
1942
Male, age 51, unknown
336.3
2218
Male, age 76, both hemispheres
275.4
1915
Female, age 42, unknown
259.5
2021
Male, age 53, unknown
255.4
2410
Female, age 72, unknown
245.7
2223
Female, age 72, unknown
232.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
261.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 261.1
Samples: 183
Max nTPM: 590.3
Min nTPM: 45.3
Std nTPM: 99.4
Median nTPM: 251.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
590.3
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
533.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
483.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
481.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
470.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
464.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
447.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
442.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
438.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
438.4
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
436.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
427.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
426.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
425.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
425.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
416.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
411.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
410.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
403.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
394.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
392.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
386.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
381.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
381.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
380.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
368.1
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
363.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
363.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
362.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
356.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
356.0
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
354.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
347.5
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
346.6
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
345.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
345.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
344.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
341.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
338.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
338.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
336.9
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
336.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
334.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
333.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
332.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
330.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
325.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
324.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
324.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
322.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
318.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
318.5
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
318.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
314.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
314.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
309.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
309.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
305.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
304.9
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
302.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
300.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
299.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
298.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
290.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
288.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
287.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
286.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
283.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
283.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
281.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
279.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
276.5
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
275.3
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
275.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
274.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
274.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
273.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
272.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
270.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
270.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
269.9
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
269.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
267.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
260.3
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
259.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
258.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
257.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
256.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
255.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
254.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
253.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
251.0
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
250.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
249.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
249.8
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
249.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
248.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
247.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
238.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
237.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
233.9
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
232.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
232.2
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
231.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
230.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
229.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
227.7
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
227.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
225.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
224.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
223.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
223.1
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
222.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
221.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
221.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
219.7
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
215.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
214.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
211.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
211.0
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
210.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
208.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
207.0
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
206.6
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
204.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
202.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
202.3
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
199.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
199.7
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
199.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
194.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
194.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
193.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
193.7
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
191.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
191.2
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
190.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
188.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
185.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
183.9
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
183.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
181.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
180.2
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
180.2
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
177.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
176.1
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
172.8
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
172.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
171.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
169.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
167.9
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
166.3
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
165.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
163.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
162.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
161.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
160.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
158.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
157.2
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
149.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
148.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
147.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
146.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
140.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
137.6
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
137.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
132.5
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
128.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
123.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
120.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
120.2
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
119.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
119.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
117.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
115.3
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
111.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
109.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
105.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
105.5
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
100.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
97.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
47.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
45.3
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
111.5
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 111.5
Samples: 1
Max nTPM: 111.5
Min nTPM: 111.5
Sample A
111.5
Midbrain nTPM: 87.3
Samples: 1
Max nTPM: 87.3
Min nTPM: 87.3
Sample A
87.3
Superior colliculi nTPM: 102.5
Samples: 1
Max nTPM: 102.5
Min nTPM: 102.5
Sample A
102.5
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
90.7
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 88.5
Samples: 3
Max nTPM: 101.6
Min nTPM: 79.2
Sample A
Female
101.6
Sample B
Female
79.2
Sample C
Male
84.8
Midbrain nTPM: 86.3
Samples: 3
Max nTPM: 105.9
Min nTPM: 66.5
Sample B
Female
105.9
Sample C
Male
86.6
Sample D
Male
66.5
Periaqueductal gray nTPM: 90.6
Samples: 3
Max nTPM: 103.4
Min nTPM: 83.2
Sample B
Female
103.4
Sample C
Male
85.3
Sample D
Male
83.2
Superior colliculi nTPM: 74.4
Samples: 4
Max nTPM: 90.4
Min nTPM: 43.6
Sample A
Female
90.4
Sample B
Female
43.6
Sample C
Male
80.0
Sample D
Male
83.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
107.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 107.5
Samples: 4
Max nTPM: 113.0
Min nTPM: 100.1
Sample A
113.0
Sample B
100.1
Sample C
106.3
Sample D
110.5
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
57.3
Rat sample
Sample description
nTPM
Midbrain nTPM: 57.3
Samples: 4
Max nTPM: 61.6
Min nTPM: 50.7
Sample A
58.2
Sample A
58.9
Sample A
61.6
Sample A
50.7
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
