MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:261.1 nTPM
HPA Brain:306.5 nTPM
GTEx:261.1 nTPM
FANTOM5:330.2 Scaled Tags Per Million
Pig:92.2 nTPM
Mouse:153.6 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 306.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 283.6
2586 Male, age 75, left hemisphere 649.4
2828 Female, age 72, unknown 336.9
2666 Male, age 74, left hemisphere 304.7
1827 Male, age 72, unknown 249.5
1870 Female, age 42, unknown 242.8
1833 Male, age 53, unknown 230.6
1830 Male, age 51, unknown 221.6
2411 Female, age 72, unknown 214.1
2219 Male, age 76, both hemispheres 199.6
2019 Male, age 18, unknown 186.6
Dorsal raphe nucleus
nTPM: 306.5
2016 Female, age 72, unknown 360.0
2047 Male, age 72, unknown 350.9
1828 Male, age 53, unknown 318.5
2750 Male, age 76, both hemispheres 257.1
2298 Female, age 72, unknown 245.8
Inferior colliculus
nTPM: 296.2
1848 Female, age 42, unknown 315.7
2849 Male, age 72, unknown 303.4
1890 Male, age 53, unknown 285.0
2097 Female, age 72, unknown 280.5
Median raphe nucleus
nTPM: 263.0
2220 Male, age 76, midline 263.0
Periaquaductal grey, anterior
nTPM: 295.9
2502 Female, age 75, unknown 324.3
1795 Male, age 51, unknown 292.3
1947 Male, age 18, unknown 271.2
Periaquaductal grey, dorsal
nTPM: 292.7
1840 Male, age 53, unknown 355.7
2850 Male, age 76, both hemispheres 292.9
2464 Female, age 72, unknown 289.1
1831 Male, age 72, unknown 233.2
Periaquaductal grey, lateral
nTPM: 285.2
2053 Male, age 18, unknown 340.5
2140 Male, age 76, both hemispheres 301.7
2272 Male, age 74, both hemispheres 213.5
Pretectal area
nTPM: 263.5
1817 Female, age 42, unknown 340.5
2825 Male, age 18, unknown 316.9
1944 Female, age 72, unknown 316.6
1816 Male, age 51, unknown 293.2
1815 Male, age 53, unknown 256.6
2007 Male, age 72, unknown 256.2
2316 Male, age 76, right hemisphere 256.2
2667 Female, age 75, unknown 232.7
2224 Female, age 72, unknown 218.5
2407 Male, age 75, both hemispheres 215.1
2273 Male, age 74, both hemispheres 195.9
Red nucleus
nTPM: 303.1
2503 Female, age 72, unknown 360.6
2588 Male, age 74, left hemisphere 344.1
2227 Male, age 72, unknown 339.5
2769 Male, age 72, unknown 330.9
1954 Female, age 42, unknown 306.1
2584 Male, age 75, left hemisphere 304.9
2725 Female, age 75, unknown 304.8
1821 Female, age 72, unknown 297.1
2823 Male, age 76, right hemisphere 296.4
1865 Male, age 51, unknown 282.0
1904 Male, age 53, unknown 257.2
2785 Male, age 18, unknown 214.1
Substantia nigra
nTPM: 293.1
2699 Male, age 18, unknown 375.0
2583 Male, age 75, right hemisphere 339.4
1941 Male, age 53, unknown 316.6
1916 Female, age 42, unknown 312.7
1889 Female, age 72, unknown 286.9
2241 Male, age 72, unknown 278.4
1851 Male, age 51, unknown 267.4
2665 Male, age 74, both hemispheres 265.7
2409 Female, age 72, unknown 245.6
2590 Female, age 75, unknown 243.4
Superior colliculus
nTPM: 263.5
2668 Female, age 75, unknown 312.8
2664 Male, age 75, both hemispheres 295.9
2261 Male, age 18, unknown 294.8
2087 Female, age 72, unknown 283.8
1796 Male, age 53, unknown 271.4
1839 Male, age 51, unknown 254.9
1995 Male, age 72, unknown 245.7
2587 Male, age 74, left hemisphere 234.2
1913 Female, age 42, unknown 228.5
1895 Male, age 76, right hemisphere 213.3
Ventral tegmental area
nTPM: 267.0
1942 Male, age 51, unknown 335.5
2218 Male, age 76, both hemispheres 275.9
1915 Female, age 42, unknown 258.8
2021 Male, age 53, unknown 254.9
2410 Female, age 72, unknown 244.8
2223 Female, age 72, unknown 232.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 261.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 261.1
Samples: 183

Max nTPM: 590.3
Min nTPM: 45.3
Std nTPM: 99.4
Median nTPM: 251.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 590.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 533.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 483.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 481.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 470.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 464.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 447.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 442.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 438.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 438.4
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 436.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 330.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 330.2
FF:10158-103A5 76 years, female 330.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 92.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 87.8
Samples: 4

Max nTPM: 100.9
Min nTPM: 78.9
Sample A Female 100.9
Sample B Female 78.9
Sample C Male 84.4
Sample D Male 86.9
Midbrain
nTPM: 92.2
Samples: 4

Max nTPM: 110.6
Min nTPM: 66.3
Sample A Female 110.6
Sample B Female 105.5
Sample C Male 86.3
Sample D Male 66.3
Periaqueductal gray
nTPM: 90.4
Samples: 3

Max nTPM: 103.1
Min nTPM: 83.0
Sample B Female 103.1
Sample C Male 85.2
Sample D Male 83.0
Superior colliculi
nTPM: 74.0
Samples: 4

Max nTPM: 89.8
Min nTPM: 43.4
Sample A Female 89.8
Sample B Female 43.4
Sample C Male 79.6
Sample D Male 83.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 153.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 153.6
Samples: 4

Max nTPM: 159.9
Min nTPM: 147.2
Sample A Male 159.9
Sample B Male 155.6
Sample C Female 147.2
Sample D Female 151.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69528040 Antisense, RP_050421_03_A03, Mouse strain C57BL/6J (56 days, male) 1.3
73520964 Antisense, RP_051017_04_E04, Mouse strain C57BL/6J (56 days, male) 0.0

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