MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:400.0 nTPM
HPA Brain:358.9 nTPM
GTEx:400.0 nTPM
FANTOM5:173.0 Scaled Tags Per Million
Pig:467.6 nTPM
Mouse:329.6 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 358.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 268.7
2019 Male, age 18, unknown 372.7
2219 Male, age 76, both hemispheres 348.7
2411 Female, age 72, unknown 312.2
1827 Male, age 72, unknown 300.4
2828 Female, age 72, unknown 266.4
1833 Male, age 53, unknown 233.8
2666 Male, age 74, left hemisphere 225.7
2586 Male, age 75, left hemisphere 216.3
1870 Female, age 42, unknown 215.5
1830 Male, age 51, unknown 195.8
Dorsal raphe nucleus
nTPM: 316.2
2298 Female, age 72, unknown 435.4
1828 Male, age 53, unknown 331.8
2047 Male, age 72, unknown 304.4
2750 Male, age 76, both hemispheres 276.9
2016 Female, age 72, unknown 232.5
Inferior colliculus
nTPM: 263.5
2097 Female, age 72, unknown 323.3
1890 Male, age 53, unknown 281.7
1848 Female, age 42, unknown 248.3
2849 Male, age 72, unknown 200.7
Median raphe nucleus
nTPM: 322.4
2220 Male, age 76, midline 322.4
Periaquaductal grey, anterior
nTPM: 277.1
1795 Male, age 51, unknown 304.3
1947 Male, age 18, unknown 273.5
2502 Female, age 75, unknown 253.5
Periaquaductal grey, dorsal
nTPM: 225.9
1831 Male, age 72, unknown 234.2
2464 Female, age 72, unknown 232.3
2850 Male, age 76, both hemispheres 222.2
1840 Male, age 53, unknown 215.0
Periaquaductal grey, lateral
nTPM: 228.2
2272 Male, age 74, both hemispheres 297.9
2140 Male, age 76, both hemispheres 193.9
2053 Male, age 18, unknown 192.7
Pretectal area
nTPM: 329.2
2007 Male, age 72, unknown 431.5
1944 Female, age 72, unknown 431.1
1817 Female, age 42, unknown 431.0
1816 Male, age 51, unknown 419.5
2667 Female, age 75, unknown 360.3
1815 Male, age 53, unknown 335.7
2224 Female, age 72, unknown 313.5
2273 Male, age 74, both hemispheres 300.5
2825 Male, age 18, unknown 205.3
2316 Male, age 76, right hemisphere 203.3
2407 Male, age 75, both hemispheres 189.2
Red nucleus
nTPM: 266.6
1821 Female, age 72, unknown 354.8
2785 Male, age 18, unknown 322.1
2725 Female, age 75, unknown 318.3
2503 Female, age 72, unknown 271.2
1954 Female, age 42, unknown 268.2
2823 Male, age 76, right hemisphere 258.7
2227 Male, age 72, unknown 254.3
2769 Male, age 72, unknown 254.1
1904 Male, age 53, unknown 253.0
1865 Male, age 51, unknown 247.4
2588 Male, age 74, left hemisphere 219.8
2584 Male, age 75, left hemisphere 178.0
Substantia nigra
nTPM: 358.9
1916 Female, age 42, unknown 552.9
1851 Male, age 51, unknown 432.1
1941 Male, age 53, unknown 411.6
1889 Female, age 72, unknown 407.0
2241 Male, age 72, unknown 374.5
2409 Female, age 72, unknown 325.9
2665 Male, age 74, both hemispheres 317.0
2699 Male, age 18, unknown 302.1
2590 Female, age 75, unknown 255.2
2583 Male, age 75, right hemisphere 210.6
Superior colliculus
nTPM: 256.9
2087 Female, age 72, unknown 375.5
2261 Male, age 18, unknown 298.4
1796 Male, age 53, unknown 296.1
2668 Female, age 75, unknown 269.0
1895 Male, age 76, right hemisphere 255.6
2587 Male, age 74, left hemisphere 252.0
1913 Female, age 42, unknown 222.8
1839 Male, age 51, unknown 215.8
1995 Male, age 72, unknown 201.2
2664 Male, age 75, both hemispheres 182.7
Ventral tegmental area
nTPM: 332.7
2410 Female, age 72, unknown 445.3
2218 Male, age 76, both hemispheres 424.0
1915 Female, age 42, unknown 385.4
1942 Male, age 51, unknown 290.9
2021 Male, age 53, unknown 226.3
2223 Female, age 72, unknown 224.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 400.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 400.0
Samples: 183

Max nTPM: 1081.6
Min nTPM: 128.4
Std nTPM: 163.2
Median nTPM: 382.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1081.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 984.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 816.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 809.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 803.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 802.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 800.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 781.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 757.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 747.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 726.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 173.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.0
FF:10158-103A5 76 years, female 173.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 467.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 323.4
Samples: 4

Max nTPM: 462.5
Min nTPM: 230.2
Sample A Female 462.5
Sample B Female 250.3
Sample C Male 350.4
Sample D Male 230.2
Midbrain
nTPM: 389.5
Samples: 4

Max nTPM: 527.7
Min nTPM: 301.1
Sample A Female 391.1
Sample B Female 301.1
Sample C Male 527.7
Sample D Male 338.2
Periaqueductal gray
nTPM: 263.9
Samples: 3

Max nTPM: 310.3
Min nTPM: 223.4
Sample B Female 258.1
Sample C Male 310.3
Sample D Male 223.4
Superior colliculi
nTPM: 467.6
Samples: 4

Max nTPM: 645.8
Min nTPM: 362.7
Sample A Female 491.4
Sample B Female 370.4
Sample C Male 645.8
Sample D Male 362.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 329.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 329.6
Samples: 4

Max nTPM: 348.1
Min nTPM: 308.3
Sample A Male 348.1
Sample B Male 323.8
Sample C Female 308.3
Sample D Female 338.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
75233570 Antisense, RP_051121_03_C01, Mouse strain C57BL/6J (56 days, male) 0.4

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