MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:133.8 nTPM
HPA Brain:95.0 nTPM
GTEx:133.8 nTPM
FANTOM5:60.3 Scaled Tags Per Million
Mouse:102.7 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 95.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.7
2019 Male, age 18, unknown 92.4
1827 Male, age 72, unknown 88.6
2666 Male, age 74, left hemisphere 88.5
2828 Female, age 72, unknown 85.6
2411 Female, age 72, unknown 83.2
2219 Male, age 76, both hemispheres 78.9
1870 Female, age 42, unknown 71.4
2586 Male, age 75, left hemisphere 69.1
1833 Male, age 53, unknown 66.9
1830 Male, age 51, unknown 62.5
Dorsal raphe nucleus
nTPM: 70.8
2750 Male, age 76, both hemispheres 81.4
1828 Male, age 53, unknown 75.6
2298 Female, age 72, unknown 75.5
2047 Male, age 72, unknown 67.8
2016 Female, age 72, unknown 53.6
Inferior colliculus
nTPM: 64.6
1890 Male, age 53, unknown 70.8
2097 Female, age 72, unknown 63.8
1848 Female, age 42, unknown 62.1
2849 Male, age 72, unknown 61.9
Median raphe nucleus
nTPM: 85.3
2220 Male, age 76, midline 85.3
Periaquaductal grey, anterior
nTPM: 72.9
1795 Male, age 51, unknown 84.2
1947 Male, age 18, unknown 70.1
2502 Female, age 75, unknown 64.5
Periaquaductal grey, dorsal
nTPM: 63.8
1831 Male, age 72, unknown 74.1
2850 Male, age 76, both hemispheres 67.6
2464 Female, age 72, unknown 60.8
1840 Male, age 53, unknown 52.6
Periaquaductal grey, lateral
nTPM: 62.4
2272 Male, age 74, both hemispheres 75.9
2053 Male, age 18, unknown 62.2
2140 Male, age 76, both hemispheres 49.3
Pretectal area
nTPM: 95.0
1816 Male, age 51, unknown 134.8
1817 Female, age 42, unknown 134.4
2007 Male, age 72, unknown 123.1
1944 Female, age 72, unknown 118.6
1815 Male, age 53, unknown 112.1
2667 Female, age 75, unknown 90.2
2273 Male, age 74, both hemispheres 73.0
2224 Female, age 72, unknown 71.4
2407 Male, age 75, both hemispheres 64.9
2825 Male, age 18, unknown 64.5
2316 Male, age 76, right hemisphere 57.6
Red nucleus
nTPM: 76.4
2785 Male, age 18, unknown 92.6
1821 Female, age 72, unknown 81.2
1904 Male, age 53, unknown 79.8
2725 Female, age 75, unknown 79.7
2823 Male, age 76, right hemisphere 78.6
2584 Male, age 75, left hemisphere 76.3
1865 Male, age 51, unknown 75.1
2588 Male, age 74, left hemisphere 74.7
2503 Female, age 72, unknown 71.1
1954 Female, age 42, unknown 71.0
2769 Male, age 72, unknown 69.9
2227 Male, age 72, unknown 67.2
Substantia nigra
nTPM: 90.0
1916 Female, age 42, unknown 122.2
1889 Female, age 72, unknown 108.4
2665 Male, age 74, both hemispheres 106.7
1851 Male, age 51, unknown 99.9
1941 Male, age 53, unknown 93.2
2699 Male, age 18, unknown 80.7
2583 Male, age 75, right hemisphere 78.9
2590 Female, age 75, unknown 74.2
2409 Female, age 72, unknown 69.9
2241 Male, age 72, unknown 65.8
Superior colliculus
nTPM: 80.1
2668 Female, age 75, unknown 101.4
2087 Female, age 72, unknown 91.5
2261 Male, age 18, unknown 86.5
2587 Male, age 74, left hemisphere 85.9
1913 Female, age 42, unknown 84.7
1796 Male, age 53, unknown 81.3
1995 Male, age 72, unknown 78.1
1895 Male, age 76, right hemisphere 69.7
1839 Male, age 51, unknown 62.0
2664 Male, age 75, both hemispheres 60.0
Ventral tegmental area
nTPM: 84.2
2410 Female, age 72, unknown 104.0
2218 Male, age 76, both hemispheres 101.2
1915 Female, age 42, unknown 85.4
2223 Female, age 72, unknown 76.1
2021 Male, age 53, unknown 70.0
1942 Male, age 51, unknown 68.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 133.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 133.8
Samples: 183

Max nTPM: 233.3
Min nTPM: 82.3
Std nTPM: 29.7
Median nTPM: 128.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 233.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 216.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 215.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 214.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 210.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 209.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 203.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 199.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 196.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 193.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 192.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.3
FF:10158-103A5 76 years, female 60.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 102.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 102.7
Samples: 4

Max nTPM: 110.0
Min nTPM: 96.7
Sample A Male 106.9
Sample B Male 96.7
Sample C Female 97.2
Sample D Female 110.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70192039 Antisense, RP_050517_01_B04, Mouse strain C57BL/6J (56 days, male) 0.0
71670701 Antisense, RP_050517_01_B04, Mouse strain C57BL/6J (56 days, male) 0.0

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