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  • RPS9
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1008.0 nTPM
HPA Brain:22.1 nTPM
GTEx:1008.0 nTPM
FANTOM5:97.8 Scaled Tags Per Million
Pig:244.0 nTPM
Mouse:633.7 nTPM
Allen mouse:17.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.1
Sample id Sample description nTPM
Amygdala
nTPM: 13.2
2695 Female, age 67, right hemisphere 30.9
2814 Male, age 76, right hemisphere 10.7
1987 Female, age 91, left hemisphere 8.3
2514 Male, age 75, right hemisphere 8.3
2517 Female, age 94, left hemisphere 7.6
Basal amygdala
nTPM: 11.3
2827 Female, age 67, right hemisphere 29.7
2110 Male, age 80, left hemisphere 9.1
1955 Male, age 76, both hemispheres 8.8
2243 Female, age 91, right hemisphere 7.3
2685 Female, age 94, left hemisphere 7.2
2609 Male, age 75, right hemisphere 5.5
Central amygdala
nTPM: 19.2
2701 Female, age 91, right hemisphere 48.9
2239 Male, age 80, left hemisphere 17.4
1905 Male, age 76, both hemispheres 10.5
2826 Female, age 94, left hemisphere 10.0
2515 Male, age 75, right hemisphere 9.1
Corticomedial amygdala
nTPM: 11.9
2428 Male, age 75, right hemisphere 23.7
2535 Female, age 67, right hemisphere 15.2
2242 Female, age 91, right hemisphere 11.9
2240 Male, age 76, both hemispheres 8.2
2429 Female, age 94, left hemisphere 6.7
2829 Male, age 80, left hemisphere 5.5
Lateral amygdala
nTPM: 22.1
2830 Female, age 67, right hemisphere 74.7
2516 Male, age 75, right hemisphere 26.1
2255 Female, age 91, right hemisphere 11.9
2256 Male, age 80, left hemisphere 9.3
2534 Female, age 94, left hemisphere 6.3
1883 Male, age 76, both hemispheres 4.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1008.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1008.0
Samples: 181

Max nTPM: 2535.7
Min nTPM: 483.5
Std nTPM: 376.9
Median nTPM: 919.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2535.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2340.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2330.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2315.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2111.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2082.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2076.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 2018.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1918.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1790.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1669.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1657.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1609.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1601.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1544.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1490.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1469.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1403.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1401.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1388.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1383.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1379.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1367.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1367.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1366.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1361.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1330.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1329.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1329.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1288.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1284.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1263.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1250.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1233.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1215.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1208.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1198.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1195.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1191.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1187.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1185.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1178.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1173.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1167.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1157.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1149.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1142.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1135.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1130.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1123.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1122.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1116.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1113.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1110.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1100.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1095.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1084.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1074.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1072.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1069.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1063.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1062.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1054.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1042.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1038.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1037.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1003.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 993.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 984.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 983.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 979.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 976.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 976.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 974.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 967.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 964.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 961.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 959.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 956.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 956.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 956.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 952.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 950.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 949.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 941.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 940.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 929.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 925.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 924.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 923.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 919.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 913.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 912.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 904.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 903.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 901.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 897.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 896.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 894.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 890.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 890.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 884.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 883.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 878.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 876.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 872.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 871.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 868.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 867.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 865.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 864.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 861.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 852.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 850.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 842.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 834.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 833.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 832.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 827.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 824.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 822.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 818.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 809.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 806.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 802.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 799.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 794.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 791.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 787.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 783.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 778.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 776.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 774.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 768.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 768.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 759.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 757.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 756.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 752.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 745.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 739.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 738.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 731.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 729.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 726.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 725.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 723.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 723.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 722.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 720.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 713.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 708.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 705.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 703.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 700.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 682.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 674.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 673.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 668.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 666.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 649.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 647.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 643.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 631.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 628.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 617.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 611.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 601.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 594.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 584.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 569.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 569.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 560.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 553.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 550.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 540.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 521.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 518.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 513.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 488.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 483.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

97.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 97.8
FF:10151-102I7 76 years, female 97.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.0
Pig sample Sample description nTPM
Amygdala
nTPM: 244.0
Samples: 4

Max nTPM: 343.7
Min nTPM: 144.0
Sample A Female 343.7
Sample B Female 276.3
Sample C Male 212.0
Sample D Male 144.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

633.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 633.7
Samples: 4

Max nTPM: 673.2
Min nTPM: 589.0
Sample A Male 589.0
Sample B Male 642.6
Sample C Female 673.2
Sample D Female 630.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.9
68563128 Antisense, RP_050125_01_B08, Mouse strain C57BL/6J (56 days, male) 17.9

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