HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:863.6 nTPM
HPA Brain:23.3 nTPM
GTEx:863.6 nTPM
FANTOM5:108.5 Scaled Tags Per Million
Pig:309.1 nTPM
Mouse:656.8 nTPM
Allen mouse:16.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA048746
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 23.3
Sample id Sample description nTPM
Hippocampus
nTPM: 14.0
2621 Female, age 67, right hemisphere 31.1
1898 Male, age 80, left hemisphere 13.9
1855 Male, age 76, left hemisphere 12.8
2529 Female, age 94, left hemisphere 10.0
1911 Female, age 85, right hemisphere 9.8
2148 Female, age 91, left hemisphere 6.1
Dentate gyrus
nTPM: 23.3
2531 Female, age 67, both hemispheres 52.7
2246 Female, age 85, both hemispheres 31.6
2528 Male, age 74, both hemispheres 26.1
2010 Male, age 76, both hemispheres 15.6
2530 Female, age 94, left hemisphere 8.7
1927 Female, age 91, both hemispheres 5.2
Entorhinal gyrus
nTPM: 9.5
1938 Female, age 85, left hemisphere 15.2
2764 Male, age 80, right hemisphere 12.7
1787 Male, age 76, left hemisphere 7.8
2613 Female, age 94, left hemisphere 7.6
2686 Male, age 75, right hemisphere 7.6
2117 Female, age 91, right hemisphere 6.2
Hippocampus, CA1
nTPM: 9.4
2082 Female, age 91, right hemisphere 15.5
2045 Male, age 76, both hemispheres 14.6
1873 Female, age 85, both hemispheres 6.5
2749 Male, age 80, left hemisphere 6.3
2527 Male, age 74, both hemispheres 4.1
Hippocampus, CA2
nTPM: 12.6
2437 Female, age 94, left hemisphere 20.4
1940 Female, age 85, left hemisphere 15.5
1963 Male, age 80, left hemisphere 15.1
1892 Male, age 76, both hemispheres 13.0
2249 Male, age 74, both hemispheres 8.7
2113 Female, age 91, right hemisphere 3.0
Hippocampus, CA3
nTPM: 9.7
1867 Male, age 76, both hemispheres 13.4
2861 Female, age 67, both hemispheres 12.8
1891 Female, age 85, both hemispheres 10.4
2620 Female, age 94, left hemisphere 9.2
2137 Male, age 80, left hemisphere 7.7
2436 Male, age 74, both hemispheres 4.8
Parahippocampal cortex
nTPM: 9.2
2245 Female, age 91, both hemispheres 26.8
2018 Male, age 76, both hemispheres 13.9
2250 Female, age 67, right hemisphere 11.5
2622 Female, age 67, right hemisphere 8.9
1850 Male, age 80, both hemispheres 6.1
1933 Female, age 85, both hemispheres 5.6
2692 Male, age 74, both hemispheres 5.6
2532 Female, age 72, left hemisphere 5.4
1990 Female, age 91, right hemisphere 4.9
2693 Female, age 94, both hemispheres 3.6
Perirhinal gyrus
nTPM: 6.2
2848 Male, age 76, right hemisphere 7.5
1847 Female, age 91, left hemisphere 7.1
1794 Male, age 80, right hemisphere 6.9
2521 Female, age 94, right hemisphere 5.0
1841 Female, age 85, right hemisphere 4.4
Subiculum
nTPM: 9.9
1901 Male, age 80, both hemispheres 17.1
2042 Male, age 76, both hemispheres 13.7
1977 Female, age 85, both hemispheres 10.4
2729 Female, age 91, right hemisphere 8.7
2619 Male, age 74, both hemispheres 5.9
2438 Female, age 94, left hemisphere 3.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 863.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 863.6
Samples: 255

Max nTPM: 2210.7
Min nTPM: 407.9
Std nTPM: 301.9
Median nTPM: 792.2
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 2210.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 2187.4
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 2088.3
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 1895.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 1766.0
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 1689.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 1683.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1651.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 1549.1
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 1546.3
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 1499.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 108.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 108.5
FF:10169-103B7 60 years, female 121.5
FF:10153-102I9 76 years, female 95.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 309.1
Pig sample Sample description nTPM
Subiculum
nTPM: 246.9
Samples: 4

Max nTPM: 390.7
Min nTPM: 178.6
Sample A Female 390.7
Sample B Female 213.0
Sample C Male 178.6
Sample D Male 205.3
Dorsal hippocampus
nTPM: 309.1
Samples: 4

Max nTPM: 487.7
Min nTPM: 196.6
Sample A Female 487.7
Sample B Female 256.2
Sample C Male 295.8
Sample D Male 196.6
Entorhinal cortex
nTPM: 233.5
Samples: 4

Max nTPM: 281.0
Min nTPM: 174.5
Sample A Female 240.1
Sample B Female 281.0
Sample C Male 238.5
Sample D Male 174.5
Ventral hippocampus
nTPM: 265.6
Samples: 4

Max nTPM: 305.2
Min nTPM: 207.1
Sample A Female 305.2
Sample B Female 207.1
Sample C Male 289.4
Sample D Male 260.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 656.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 577.0
Samples: 4

Max nTPM: 628.6
Min nTPM: 551.8
Sample A Male 574.0
Sample B Male 553.7
Sample C Female 628.6
Sample D Female 551.8
Hippocampal formation
nTPM: 656.8
Samples: 4

Max nTPM: 698.9
Min nTPM: 576.5
Sample A Male 654.1
Sample B Male 576.5
Sample C Female 697.8
Sample D Female 698.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 16.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.5
68563128 Antisense, RP_050125_01_B08, Mouse strain C57BL/6J (56 days, male) 16.5

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