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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
226.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 203.7
2411
Female, age 72, unknown
241.6
2828
Female, age 72, unknown
216.5
2586
Male, age 75, left hemisphere
213.8
1827
Male, age 72, unknown
207.4
1870
Female, age 42, unknown
200.2
2666
Male, age 74, left hemisphere
199.1
2019
Male, age 18, unknown
196.6
1830
Male, age 51, unknown
192.1
1833
Male, age 53, unknown
192.0
2219
Male, age 76, both hemispheres
177.9
Dorsal raphe nucleus nTPM: 204.1
2016
Female, age 72, unknown
219.6
2298
Female, age 72, unknown
217.5
2750
Male, age 76, both hemispheres
206.1
1828
Male, age 53, unknown
194.2
2047
Male, age 72, unknown
182.9
Inferior colliculus nTPM: 206.9
2097
Female, age 72, unknown
220.6
1890
Male, age 53, unknown
206.3
1848
Female, age 42, unknown
201.5
2849
Male, age 72, unknown
199.3
Median raphe nucleus nTPM: 181.1
2220
Male, age 76, midline
181.1
Periaquaductal grey, anterior nTPM: 204.3
2502
Female, age 75, unknown
227.4
1795
Male, age 51, unknown
197.8
1947
Male, age 18, unknown
187.8
Periaquaductal grey, dorsal nTPM: 199.2
1840
Male, age 53, unknown
220.3
2464
Female, age 72, unknown
204.9
1831
Male, age 72, unknown
191.5
2850
Male, age 76, both hemispheres
179.9
Periaquaductal grey, lateral nTPM: 187.0
2053
Male, age 18, unknown
215.5
2272
Male, age 74, both hemispheres
174.0
2140
Male, age 76, both hemispheres
171.5
Pretectal area nTPM: 193.5
2007
Male, age 72, unknown
214.8
1817
Female, age 42, unknown
213.6
2316
Male, age 76, right hemisphere
206.8
1815
Male, age 53, unknown
201.9
1816
Male, age 51, unknown
198.9
2224
Female, age 72, unknown
190.3
2825
Male, age 18, unknown
189.1
2273
Male, age 74, both hemispheres
186.8
2407
Male, age 75, both hemispheres
177.7
1944
Female, age 72, unknown
174.8
2667
Female, age 75, unknown
174.0
Red nucleus nTPM: 212.9
2503
Female, age 72, unknown
240.7
1865
Male, age 51, unknown
228.1
1821
Female, age 72, unknown
226.8
2769
Male, age 72, unknown
222.8
2584
Male, age 75, left hemisphere
216.9
2227
Male, age 72, unknown
216.7
2588
Male, age 74, left hemisphere
209.7
1904
Male, age 53, unknown
207.3
2725
Female, age 75, unknown
203.8
2785
Male, age 18, unknown
201.9
1954
Female, age 42, unknown
193.2
2823
Male, age 76, right hemisphere
187.1
Substantia nigra nTPM: 226.0
1851
Male, age 51, unknown
264.0
2665
Male, age 74, both hemispheres
256.2
2409
Female, age 72, unknown
252.2
2699
Male, age 18, unknown
237.0
1916
Female, age 42, unknown
233.3
2241
Male, age 72, unknown
220.2
2590
Female, age 75, unknown
218.1
1889
Female, age 72, unknown
201.4
1941
Male, age 53, unknown
197.1
2583
Male, age 75, right hemisphere
181.0
Superior colliculus nTPM: 205.5
2587
Male, age 74, left hemisphere
246.8
1796
Male, age 53, unknown
228.9
2668
Female, age 75, unknown
218.0
1995
Male, age 72, unknown
205.3
2261
Male, age 18, unknown
201.3
1913
Female, age 42, unknown
198.7
1839
Male, age 51, unknown
196.7
2664
Male, age 75, both hemispheres
195.0
2087
Female, age 72, unknown
188.5
1895
Male, age 76, right hemisphere
175.7
Ventral tegmental area nTPM: 214.7
1915
Female, age 42, unknown
248.4
2223
Female, age 72, unknown
231.6
2410
Female, age 72, unknown
229.1
2021
Male, age 53, unknown
213.1
1942
Male, age 51, unknown
185.5
2218
Male, age 76, both hemispheres
180.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
766.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 766.0
Samples: 183
Max nTPM: 1597.1
Min nTPM: 358.0
Std nTPM: 220.0
Median nTPM: 727.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1597.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1545.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1466.6
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1236.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1235.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1227.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1198.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1189.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
1181.5
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1178.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1161.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
1161.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1144.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1119.9
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1105.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1095.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1084.5
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1080.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1076.0
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
1071.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1029.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1027.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1014.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1008.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1005.9
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1005.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1002.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1000.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
979.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
974.6
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
962.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
949.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
944.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
944.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
931.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
925.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
922.6
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
921.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
920.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
917.0
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
908.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
907.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
906.1
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
901.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
887.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
881.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
880.2
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
875.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
873.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
865.8
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
864.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
863.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
859.9
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
857.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
853.6
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
848.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
846.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
844.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
843.6
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
836.4
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
829.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
828.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
825.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
824.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
824.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
820.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
819.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
816.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
814.8
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
812.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
809.2
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
806.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
806.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
801.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
799.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
794.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
792.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
784.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
779.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
776.4
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
774.4
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
770.7
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
763.4
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
759.7
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
753.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
744.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
742.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
741.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
733.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
728.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
727.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
727.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
726.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
722.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
706.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
706.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
704.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
704.2
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
704.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
703.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
700.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
699.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
698.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
697.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
692.2
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
692.1
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
688.8
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
685.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
681.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
673.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
673.5
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
669.2
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
669.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
668.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
665.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
663.8
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
659.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
658.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
656.2
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
653.5
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
653.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
649.2
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
642.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
637.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
635.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
635.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
632.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
631.6
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
630.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
626.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
626.1
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
626.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
625.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
624.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
620.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
616.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
614.2
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
614.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
612.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
612.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
609.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
608.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
608.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
605.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
603.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
600.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
589.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
587.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
584.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
583.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
574.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
570.7
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
561.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
554.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
550.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
544.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
542.0
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
540.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
539.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
535.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
532.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
531.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
530.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
516.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
511.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
504.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
499.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
496.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
494.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
492.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
490.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
480.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
476.3
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
467.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
463.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
449.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
444.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
437.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
418.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
416.7
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
410.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
384.0
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
358.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
555.7
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 535.7
Samples: 4
Max nTPM: 691.5
Min nTPM: 433.9
Sample A
Female
691.5
Sample B
Female
581.2
Sample C
Male
433.9
Sample D
Male
436.1
Midbrain nTPM: 523.0
Samples: 4
Max nTPM: 751.3
Min nTPM: 367.6
Sample A
Female
751.3
Sample B
Female
547.2
Sample C
Male
425.8
Sample D
Male
367.6
Periaqueductal gray nTPM: 423.6
Samples: 3
Max nTPM: 437.5
Min nTPM: 400.9
Sample B
Female
437.5
Sample C
Male
432.5
Sample D
Male
400.9
Superior colliculi nTPM: 555.7
Samples: 4
Max nTPM: 635.7
Min nTPM: 464.9
Sample A
Female
635.7
Sample B
Female
618.8
Sample C
Male
503.5
Sample D
Male
464.9
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
471.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 471.2
Samples: 4
Max nTPM: 506.3
Min nTPM: 420.7
Sample A
Male
506.3
Sample B
Male
461.4
Sample C
Female
420.7
Sample D
Female
496.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.