On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
764.5
nTPM
HPA Brain:
300.9
nTPM
GTEx:
764.5
nTPM
FANTOM5:
21.4
Scaled Tags Per Million
Mouse:
133.6
nTPM
Rat:
21.6
nTPM
Pig:
688.0
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
37844
Sample
Intensity
Spinal cord_01
82632
Spinal cord_02
75557
Spinal cord_03
40624
Spinal cord_04
48095
Spinal cord_05
31562
Spinal cord_06
21407
Spinal cord_07
35064
Spinal cord_08
20463
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
300.9
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 262.3
2819
Male, age 47, both hemispheres
275.7
2193
Male, age 75, both hemispheres
271.6
2734
Male, age 80, both hemispheres
265.9
2818
Female, age 79, both hemispheres
236.1
Cervical spinal cord, central gray nTPM: 228.6
1981
Female, age 72, midline
278.4
2565
Male, age 75, midline
272.3
2048
Male, age 55, midline
218.7
2194
Female, age 79, both hemispheres
189.8
2816
Male, age 47, midline
183.5
Cervical spinal cord, dorsal horn nTPM: 237.7
2173
Female, age 72, unknown
327.4
2069
Male, age 47, both hemispheres
282.7
2296
Male, age 66, both hemispheres
253.2
1877
Male, age 55, unknown
227.8
2297
Male, age 75, both hemispheres
172.2
2721
Male, age 90, both hemispheres
162.7
Cervical spinal cord, ventral horn nTPM: 300.9
2480
Male, age 75, both hemispheres
397.4
2809
Male, age 90, both hemispheres
379.4
2098
Female, age 72, unknown
336.7
2068
Male, age 55, unknown
270.3
2295
Male, age 66, both hemispheres
259.5
2820
Female, age 79, both hemispheres
162.3
Dorsal funiculus (white matter) nTPM: 246.0
2810
Male, age 90, both hemispheres
260.4
2812
Male, age 66, both hemispheres
254.6
2128
Male, age 75, both hemispheres
243.0
2064
Female, age 79, both hemispheres
238.6
2817
Male, age 47, both hemispheres
233.3
Lateral funiculus (white matter) nTPM: 280.4
2094
Female, age 79, both hemispheres
287.3
2099
Male, age 90, both hemispheres
284.9
2192
Male, age 75, both hemispheres
275.5
2294
Male, age 66, both hemispheres
274.0
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
764.5
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 764.5
Samples: 204
Max nTPM: 1494.2
Min nTPM: 389.4
Std nTPM: 198.1
Median nTPM: 742.7
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
1494.2
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
1376.1
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
1356.8
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
1279.4
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
1261.1
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
1239.6
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
1193.1
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
1188.9
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
1163.9
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
1132.3
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
1129.8
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
1115.6
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
1106.8
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
1078.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
1073.7
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
1064.6
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
1063.5
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
1057.6
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
1036.1
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
1011.9
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
1008.1
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
1008.0
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
997.0
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
996.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
994.5
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
989.8
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
981.3
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
977.8
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
972.4
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
966.3
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
963.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
962.7
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
961.3
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
957.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
953.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
952.7
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
936.2
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
933.7
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
933.6
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
933.3
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
932.9
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
932.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
922.5
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
920.9
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
917.5
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
915.7
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
902.7
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
880.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
871.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
864.9
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
864.8
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
863.0
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
859.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
857.2
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
855.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
855.5
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
851.4
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
850.9
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
850.2
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
849.6
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
846.5
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
844.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
843.1
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
841.3
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
838.7
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
838.5
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
834.8
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
831.4
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
817.2
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
817.0
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
814.6
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
812.1
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
806.8
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
806.7
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
804.9
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
803.3
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
798.0
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
797.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
792.2
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
791.9
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
791.2
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
788.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
785.7
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
782.7
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
781.3
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
780.1
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
780.0
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
778.4
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
776.5
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
775.5
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
772.7
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
771.4
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
769.6
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
769.4
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
766.8
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
766.1
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
761.5
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
761.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
760.1
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
758.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
755.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
749.0
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
736.5
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
736.0
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
728.5
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
728.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
727.6
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
727.3
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
727.3
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
725.5
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
711.8
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
711.6
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
709.6
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
707.4
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
705.9
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
704.7
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
704.4
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
703.3
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
702.9
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
701.2
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
691.7
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
687.8
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
685.7
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
678.7
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
677.2
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
672.3
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
670.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
668.2
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
667.1
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
664.1
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
661.3
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
660.4
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
655.3
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
654.0
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
653.9
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
653.7
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
652.0
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
650.7
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
648.2
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
647.4
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
646.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
643.4
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
643.2
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
641.8
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
641.1
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
639.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
636.3
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
635.7
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
633.4
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
632.3
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
631.6
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
630.9
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
630.9
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
629.7
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
623.4
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
623.0
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
617.1
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
616.4
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
616.3
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
611.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
610.5
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
609.2
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
607.6
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
601.5
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
600.7
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
600.3
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
597.1
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
596.5
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
593.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
584.9
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
580.9
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
580.0
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
579.4
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
579.1
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
578.0
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
573.2
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
572.9
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
571.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
565.4
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
563.2
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
562.2
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
554.4
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
550.3
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
541.9
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
525.1
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
520.9
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
507.4
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
504.7
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
503.2
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
494.3
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
494.2
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
491.3
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
490.3
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
485.9
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
483.4
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
463.0
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
462.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
452.5
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
451.3
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
443.8
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
420.9
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
413.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
400.6
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
389.4
Show allShow less
SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
688.0
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 688.0
Samples: 4
Max nTPM: 1058.7
Min nTPM: 474.0
Sample A
Female
474.0
Sample B
Female
721.4
Sample C
Male
1058.7
Sample D
Male
497.9
Ventral spinal cord nTPM: 575.7
Samples: 4
Max nTPM: 670.6
Min nTPM: 450.6
Sample A
Female
450.6
Sample B
Female
613.7
Sample C
Male
670.6
Sample D
Male
568.0
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
133.6
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 133.6
Samples: 4
Max nTPM: 147.0
Min nTPM: 99.5
Sample A
146.8
Sample B
99.5
Sample C
147.0
Sample D
141.1
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.6
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 21.6
Samples: 4
Max nTPM: 26.5
Min nTPM: 18.6
Sample A
20.8
Sample A
26.5
Sample A
18.6
Sample A
20.4
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
