Brain tissue expression of RPS7 in pons

PONS - Expression summary

Protein expressionⁱ

No data

RNA expressionⁱ

HPA Brain:	242.2	nTPM
FANTOM5:	28.4	Scaled Tags Per Million

Mouse:	110.9	nTPM
Rat:	28.9	nTPM
Pig:	593.0	nTPM

PONS - SINGLE NUCLEI RNA EXPRESSIONⁱ RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right). - UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon - The BAR CHART* shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.

SINGLE NUCLEI BRAIN - PONS, NEURONSⁱ

Cell type color

Cluster color

Colored according to cell type group

Read count filter: 0

Cluster		Cell type
	c-1	Excitatory (VGLUT1/2)
	c-2	Excitatory (VGLUT1) ETV1+ Z...
	c-3	Excitatory (VGLUT1/2)
	c-4	Excitatory (VGLUT1) ETV1+ Z...
	c-5	Excitatory (VGLUT1/2)
	c-6	Excitatory (VGLUT1/2)
	c-7	Excitatory (VGLUT1/2)
	c-8	Inhibitory (GAD1/2) SLC6A5+
	c-9	Excitatory (VGLUT2)
	c-10	Excitatory (VGLUT1/2)
	c-11	Excitatory (VGLUT1/2)
	c-12	Unassigned
	c-13	Inhibitory (GAD1/2) RORB+ K
	c-14	Inhibitory (GAD1/2) SST+
	c-15	Excitatory (VGLUT1) ETV1+ Z...
	c-16	Excitatory (VGLUT2)
	c-17	Excitatory (VGLUT1/2)
	c-18	Inhibitory (GAD1/2)
	c-19	Inhibitory (GAD1) PENK+ SST
	c-20	Excitatory (VGLUT2) FOXP2+
	c-21	Excitatory (VGLUT2) LMX1A+
	c-22	Excitatory (VGLUT2) MEIS2+
	c-23	Inhibitory (GAD1/2) SLC6A5+...
	c-24	Inhibitory (GAD1/2) SLC6A5+...
	c-25	Serotonergic SLC6A4+ SLC18A...
	c-26	Inhibitory (GAD1/2) PVALB+ ...
	c-27	Excitatory (VGLUT2)
	c-28	(VGLUT3) PENK+
	c-29	MEIS2+
	c-30	LMX1A+
	c-31	Inhibitory (GAD1/2) TAC1+
	c-32	Excitatory (VGLUT2) PVALB+
	c-33	Inhibitory (GAD1/2) PVALB+ ...
	c-34	Inhibitory (GAD1/2)
	c-35	Excitatory (VGLUT2) SST+ ME...
	c-36	LC Noradrenergic SLC6A2+ SL...
	c-37	Excitatory (VGLUT2) CRH+ FO...
	c-38	Inhibitory (GAD1/2) PVALB+ ...
	c-39	Excitatory (VGLUT2)
	c-40	Excitatory (VGLUT2) PVALB+
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This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview

SINGLE NUCLEI BRAIN - PONS, NON-NEURONALⁱ

Cell type color

Cluster color

Colored according to cell type group

Read count filter: 0

Cluster		Cell type
	c-1	Oligodendrocytes
	c-2	Oligodendrocytes
	c-3	Oligodendrocyte progenitor ...
	c-4	Oligodendrocytes
	c-5	Oligodendrocytes
	c-6	Oligodendrocytes
	c-7	Microglia
	c-8	Astrocytes
	c-9	Oligodendrocytes
	c-10	Astrocytes (CD44+)
	c-11	Oligodendrocytes
	c-12	Fibroblasts
	c-13	Vascular endothelial cells
	c-14	Pericytes
	c-15	Ependymal cells
	c-16	Lymphocytes
	c-17	Macrophages
	c-18	Microglia (SPP1+ HIF1A+)
	c-19	Bergmann glia
	c-20	Immature oligodendrocytes
	c-21	Oligodendrocyte progenitor ...
	c-22	Vascular smooth muscle cell
	c-23	Monocytes
	c-24	Immature oligodendrocytes
	c-25	Fibroblasts (BNC2+ KCNMA1+ ...
	c-26	Choroid plexus epithelial c...
	c-27	Macrophage Microglia double
	c-28	OPC & lymphocytes doublets
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This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview

PONS - HPA Brain Stereo-seq

PONS - HPA Brain RNA-seq

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	242.2

Sample id

Sample description

nTPM

Anterior cochlear nucleus, ventral
nTPM: 223.5

2090	Male, age 80, both hemispheres	241.7
2188	Female, age 91, both hemispheres	234.0
2301	Female, age 85, both hemispheres	211.9
1984	Male, age 76, both hemispheres	206.3

Dorsal cochlear nucleus
nTPM: 239.4

2378	Male, age 80, both hemispheres	263.4
2802	Male, age 74, right hemisphere	258.6
2187	Female, age 91, both hemispheres	242.3
2370	Male, age 61, both hemispheres	228.8
2058	Male, age 76, both hemispheres	204.0

Dorsal tegmental nucleus
nTPM: 219.7

2083	Male, age 80, both hemispheres	240.8
2326	Male, age 74, both hemispheres	237.7
2358	Male, age 61, both hemispheres	209.8
1936	Male, age 76, left hemisphere	190.4

Dorsolateral tegmental area
nTPM: 233.4

2654	Male, age 80, both hemispheres	272.5
2360	Male, age 74, both hemispheres	240.5
2337	Male, age 61, both hemispheres	234.5
2751	Female, age 85, both hemispheres	230.2
2141	Male, age 76, both hemispheres	189.2

Kolliker-Fuse nucleus
nTPM: 226.5

2315	Male, age 76, right hemisphere	264.6
2793	Female, age 91, left hemisphere	208.9
2163	Male, age 80, both hemispheres	206.1

Lateral lemniscal nuclei
nTPM: 189.1

2169	Male, age 76, both hemispheres	219.9
2746	Female, age 85, left hemisphere	209.5
2036	Male, age 80, both hemispheres	178.4
2320	Female, age 91, left hemisphere	172.8
2453	Male, age 74, right hemisphere	164.9

Lateral parabrachial nucleus
nTPM: 241.7

2792	Male, age 76, both hemispheres	275.8
2013	Male, age 80, both hemispheres	240.4
2139	Female, age 85, right hemisphere	237.4
2790	Male, age 61, both hemispheres	213.2

Lateral vestibular nucleus
nTPM: 205.7

2311	Male, age 80, both hemispheres	233.1
2184	Male, age 76, both hemispheres	178.3

Locus coeruleus
nTPM: 187.0

2123	Female, age 91, both hemispheres	212.2
2162	Male, age 80, both hemispheres	199.3
2720	Male, age 74, both hemispheres	197.0
2014	Male, age 55, unknown	189.3
2317	Female, age 72, unknown	177.4
2788	Male, age 74, unknown	169.7
1980	Male, age 76, both hemispheres	163.9

Medial parabrachial nucleus
nTPM: 215.3

2170	Female, age 91, both hemispheres	247.4
2854	Male, age 80, both hemispheres	218.8
2463	Female, age 85, right hemisphere	218.2
2786	Male, age 76, both hemispheres	207.9
2156	Male, age 61, both hemispheres	184.3

Medial periolivary nuclei
nTPM: 213.2

2063	Male, age 76, both hemispheres	257.0
2171	Female, age 85, both hemispheres	212.1
2081	Male, age 80, both hemispheres	210.2
2791	Male, age 74, right hemisphere	199.6
2458	Female, age 91, both hemispheres	186.9

Motor facial nucleus
nTPM: 209.1

2062	Male, age 76, both hemispheres	256.1
2126	Male, age 61, both hemispheres	223.0
2795	Female, age 91, both hemispheres	217.2
2697	Female, age 85, both hemispheres	204.3
2365	Male, age 74, right hemisphere	186.9
2327	Male, age 80, both hemispheres	167.0

Motor trigeminal nucleus
nTPM: 198.3

2335	Male, age 61, both hemispheres	213.0
2309	Male, age 76, both hemispheres	202.3
2560	Male, age 74, both hemispheres	199.9
2321	Female, age 91, both hemispheres	192.3
2079	Male, age 80, both hemispheres	184.4

Nuclei of the trapezoid body
nTPM: 220.9

1983	Male, age 76, both hemispheres	294.2
2735	Female, age 85, both hemispheres	216.6
2159	Male, age 61, both hemispheres	201.0
2166	Male, age 80, both hemispheres	198.5
2368	Female, age 91, both hemispheres	194.1

Nucleus raphe magnus
nTPM: 197.5

2051	Male, age 76, both hemispheres	207.8
2172	Female, age 85, both hemispheres	201.7
2459	Female, age 91, both hemispheres	199.2
2455	Male, age 74, both hemispheres	197.2
2160	Male, age 61, both hemispheres	196.4
2328	Male, age 80, both hemispheres	182.8

Paramedian reticular nucleus
nTPM: 218.9

2057	Male, age 80, both hemispheres	234.8
2050	Female, age 85, both hemispheres	218.9
2052	Male, age 76, both hemispheres	213.7
2313	Male, age 61, both hemispheres	208.0

Pedunculopontine tegmental nucleus
nTPM: 202.9

2334	Male, age 80, both hemispheres	222.7
2338	Male, age 61, both hemispheres	222.0
1921	Female, age 85, both hemispheres	164.1

Pontine nuclei
nTPM: 218.2

1968	Male, age 76, left hemisphere	254.1
1863	Male, age 55, unknown	232.5
2319	Female, age 91, both hemispheres	222.5
2787	Female, age 85, both hemispheres	221.8
2109	Female, age 72, unknown	209.9
2727	Male, age 61, right hemisphere	205.4
2454	Male, age 74, left hemisphere	203.8
2115	Male, age 80, left hemisphere	195.8

Pontine raphe nucleus
nTPM: 208.4

2122	Female, age 85, midline	213.9
2853	Male, age 76, midline	203.0

Posteroventral cochlear nucleus
nTPM: 242.2

2341	Male, age 80, both hemispheres	262.7
2371	Male, age 61, both hemispheres	262.1
2135	Female, age 91, both hemispheres	242.3
2752	Female, age 85, both hemispheres	237.1
2070	Male, age 76, both hemispheres	206.7

Principal sensory trigeminal nucleus
nTPM: 191.6

2158	Male, age 61, both hemispheres	210.3
2367	Female, age 91, left hemisphere	187.5
2008	Male, age 80, left hemisphere	184.9
2324	Male, age 76, both hemispheres	183.5

Reticular pontine nucleus, caudal
nTPM: 215.1

2092	Male, age 76, both hemispheres	242.3
2559	Male, age 74, both hemispheres	230.2
2457	Female, age 91, both hemispheres	223.6
2332	Male, age 80, right hemisphere	164.4

Reticular pontine nucleus, oral
nTPM: 212.5

2361	Male, age 74, both hemispheres	230.5
1939	Male, age 80, both hemispheres	212.2
2167	Male, age 76, both hemispheres	212.2
2366	Female, age 91, both hemispheres	208.8
2012	Female, age 85, both hemispheres	198.9

Reticulotegmental nucleus
nTPM: 205.1

2452	Male, age 74, both hemispheres	239.6
2333	Male, age 80, both hemispheres	198.9
2322	Female, age 91, both hemispheres	194.8
2325	Male, age 76, both hemispheres	187.1

Spinal trigeminal nucleus, oral
nTPM: 193.3

2164	Male, age 80, both hemispheres	197.5
2737	Female, age 85, both hemispheres	192.0
1978	Male, age 76, both hemispheres	190.6

Subcoeruleus area
nTPM: 208.5

2451	Male, age 74, both hemispheres	250.2
2369	Female, age 85, left hemisphere	215.6
1958	Male, age 80, both hemispheres	194.6
2089	Male, age 76, left hemisphere	193.1
2323	Female, age 91, left hemisphere	189.2

Superior olive
nTPM: 202.7

2020	Male, age 76, both hemispheres	247.3
2364	Male, age 74, right hemisphere	208.7
2561	Female, age 91, both hemispheres	198.5
1875	Female, age 85, both hemispheres	189.4
2329	Male, age 80, right hemisphere	169.5

Ventral periolivary nuclei
nTPM: 212.2

2023	Male, age 76, both hemispheres	244.9
2165	Male, age 80, both hemispheres	206.2
2794	Female, age 91, left hemisphere	202.0
2130	Female, age 85, both hemispheres	195.9

Ventrolateral tegmental area, A5 NE cell group
nTPM: 197.4

2161	Male, age 80, both hemispheres	214.2
1959	Male, age 76, both hemispheres	209.6
2456	Female, age 91, both hemispheres	200.0
2840	Female, age 85, both hemispheres	194.6
2359	Male, age 61, both hemispheres	189.4
2449	Male, age 74, both hemispheres	176.6

PONS - FANTOM5 CAGEⁱ

Max subtype Scaled Tags Per Millionⁱ Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.	28.4

FANTOM5 sample id

Sample description

Scaled Tags Per Million

Locus coeruleus
Scaled Tags Per Million: 27.2

FF:10182-103D2	60 years, female	31.0
FF:10165-103B3	76 years, female	23.5

Pons
Scaled Tags Per Million: 28.4

FF:10033-101E6

18-54 years, mixed

28.4

PONS - Pig RNA-seqⁱ

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	593.0

Pig sample

Sample description

nTPM

Pons
nTPM: 593.0

Samples: 3

Max nTPM: 763.9
Min nTPM: 413.8

Sample A	Female	601.4
Sample B	Female	413.8
Sample C	Male	763.9

PONS - Mouse RNA-seqⁱ

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	110.9

Mouse sample

Sample description

nTPM

Pons
nTPM: 110.9

Samples: 4

Max nTPM: 126.4
Min nTPM: 92.5

Sample A		92.5
Sample B		126.4
Sample C		113.3
Sample D		111.3

PONS - Rat RNA-seq

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	28.9

Rat sample

Sample description

nTPM

Pons
nTPM: 28.9

Samples: 4

Max nTPM: 32.3
Min nTPM: 21.4

Sample A		21.4
Sample A		32.3
Sample A		31.7
Sample A		30.2