MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:123.0 nTPM
HPA Brain:42.8 nTPM
GTEx:123.0 nTPM
FANTOM5:83.0 Scaled Tags Per Million
Pig:19.7 nTPM
Mouse:43.7 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.3
1870 Female, age 42, unknown 45.7
2019 Male, age 18, unknown 43.0
2411 Female, age 72, unknown 41.4
2586 Male, age 75, left hemisphere 38.8
2219 Male, age 76, both hemispheres 38.5
1827 Male, age 72, unknown 35.9
2828 Female, age 72, unknown 35.8
1830 Male, age 51, unknown 34.1
1833 Male, age 53, unknown 33.5
2666 Male, age 74, left hemisphere 26.2
Dorsal raphe nucleus
nTPM: 42.8
2047 Male, age 72, unknown 47.6
1828 Male, age 53, unknown 44.2
2298 Female, age 72, unknown 43.3
2750 Male, age 76, both hemispheres 41.3
2016 Female, age 72, unknown 37.6
Inferior colliculus
nTPM: 34.4
2097 Female, age 72, unknown 36.6
1890 Male, age 53, unknown 34.1
1848 Female, age 42, unknown 33.9
2849 Male, age 72, unknown 33.0
Median raphe nucleus
nTPM: 41.4
2220 Male, age 76, midline 41.4
Periaquaductal grey, anterior
nTPM: 40.2
1947 Male, age 18, unknown 42.3
1795 Male, age 51, unknown 40.1
2502 Female, age 75, unknown 38.1
Periaquaductal grey, dorsal
nTPM: 32.4
2850 Male, age 76, both hemispheres 37.0
1840 Male, age 53, unknown 35.7
2464 Female, age 72, unknown 31.0
1831 Male, age 72, unknown 25.9
Periaquaductal grey, lateral
nTPM: 36.9
2140 Male, age 76, both hemispheres 39.1
2053 Male, age 18, unknown 37.4
2272 Male, age 74, both hemispheres 34.2
Pretectal area
nTPM: 42.0
1817 Female, age 42, unknown 54.3
2007 Male, age 72, unknown 53.9
1815 Male, age 53, unknown 47.1
2273 Male, age 74, both hemispheres 43.4
1816 Male, age 51, unknown 40.8
1944 Female, age 72, unknown 39.7
2224 Female, age 72, unknown 39.5
2667 Female, age 75, unknown 39.2
2407 Male, age 75, both hemispheres 36.0
2316 Male, age 76, right hemisphere 35.0
2825 Male, age 18, unknown 32.8
Red nucleus
nTPM: 42.0
2785 Male, age 18, unknown 49.7
2725 Female, age 75, unknown 46.0
2588 Male, age 74, left hemisphere 45.1
1865 Male, age 51, unknown 44.5
2769 Male, age 72, unknown 43.3
1821 Female, age 72, unknown 42.6
2503 Female, age 72, unknown 41.8
1954 Female, age 42, unknown 41.1
2227 Male, age 72, unknown 40.5
1904 Male, age 53, unknown 40.0
2823 Male, age 76, right hemisphere 39.3
2584 Male, age 75, left hemisphere 30.3
Substantia nigra
nTPM: 42.8
1916 Female, age 42, unknown 51.7
1889 Female, age 72, unknown 51.0
2409 Female, age 72, unknown 47.8
1851 Male, age 51, unknown 45.1
2241 Male, age 72, unknown 44.2
1941 Male, age 53, unknown 42.8
2590 Female, age 75, unknown 41.8
2583 Male, age 75, right hemisphere 35.0
2699 Male, age 18, unknown 34.7
2665 Male, age 74, both hemispheres 33.8
Superior colliculus
nTPM: 35.5
2587 Male, age 74, left hemisphere 41.6
2087 Female, age 72, unknown 38.9
1895 Male, age 76, right hemisphere 38.1
2261 Male, age 18, unknown 36.7
2668 Female, age 75, unknown 36.2
1796 Male, age 53, unknown 34.9
1913 Female, age 42, unknown 33.0
1839 Male, age 51, unknown 32.7
2664 Male, age 75, both hemispheres 32.0
1995 Male, age 72, unknown 30.6
Ventral tegmental area
nTPM: 41.6
1915 Female, age 42, unknown 48.0
1942 Male, age 51, unknown 43.3
2223 Female, age 72, unknown 41.1
2218 Male, age 76, both hemispheres 40.5
2410 Female, age 72, unknown 39.9
2021 Male, age 53, unknown 36.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 123.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 123.0
Samples: 183

Max nTPM: 226.4
Min nTPM: 56.6
Std nTPM: 31.0
Median nTPM: 117.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 226.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 220.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 213.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 211.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 206.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 203.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 196.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 187.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 185.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 182.7
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 177.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.0
FF:10158-103A5 76 years, female 83.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.6
Samples: 4

Max nTPM: 22.4
Min nTPM: 14.2
Sample A Female 22.4
Sample B Female 15.0
Sample C Male 18.6
Sample D Male 14.2
Midbrain
nTPM: 19.7
Samples: 4

Max nTPM: 25.3
Min nTPM: 16.6
Sample A Female 25.3
Sample B Female 19.7
Sample C Male 16.6
Sample D Male 17.3
Periaqueductal gray
nTPM: 16.8
Samples: 3

Max nTPM: 19.4
Min nTPM: 15.3
Sample B Female 15.6
Sample C Male 19.4
Sample D Male 15.3
Superior colliculi
nTPM: 18.0
Samples: 4

Max nTPM: 24.1
Min nTPM: 13.4
Sample A Female 24.1
Sample B Female 13.4
Sample C Male 17.9
Sample D Male 16.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.8
Samples: 4

Max nTPM: 62.9
Min nTPM: 27.4
Sample A Male 62.9
Sample B Male 40.1
Sample C Female 27.4
Sample D Female 44.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71020801 Antisense, RP_050505_01_G08, Mouse strain C57BL/6J (56 days, male) 0.0

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