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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:65.3 nTPM
HPA Brain:72.7 nTPM
GTEx:65.3 nTPM
FANTOM5:69.9 Scaled Tags Per Million
Pig:47.4 nTPM
Mouse:46.9 nTPM
Allen mouse:5.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.7
Sample id Sample description nTPM
Amygdala
nTPM: 72.7
2514 Male, age 75, right hemisphere 85.0
2695 Female, age 67, right hemisphere 73.0
2814 Male, age 76, right hemisphere 71.9
1987 Female, age 91, left hemisphere 71.0
2517 Female, age 94, left hemisphere 62.8
Basal amygdala
nTPM: 65.1
2609 Male, age 75, right hemisphere 70.1
1955 Male, age 76, both hemispheres 69.2
2243 Female, age 91, right hemisphere 67.4
2685 Female, age 94, left hemisphere 65.1
2110 Male, age 80, left hemisphere 63.7
2827 Female, age 67, right hemisphere 55.4
Central amygdala
nTPM: 66.9
2239 Male, age 80, left hemisphere 68.8
2515 Male, age 75, right hemisphere 68.7
1905 Male, age 76, both hemispheres 68.3
2826 Female, age 94, left hemisphere 64.7
2701 Female, age 91, right hemisphere 63.8
Corticomedial amygdala
nTPM: 65.4
2428 Male, age 75, right hemisphere 76.5
2429 Female, age 94, left hemisphere 71.4
2829 Male, age 80, left hemisphere 67.5
2240 Male, age 76, both hemispheres 65.0
2242 Female, age 91, right hemisphere 57.4
2535 Female, age 67, right hemisphere 54.7
Lateral amygdala
nTPM: 67.7
1883 Male, age 76, both hemispheres 75.3
2516 Male, age 75, right hemisphere 73.5
2534 Female, age 94, left hemisphere 68.0
2255 Female, age 91, right hemisphere 65.9
2256 Male, age 80, left hemisphere 64.9
2830 Female, age 67, right hemisphere 58.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 65.3
Samples: 181

Max nTPM: 120.6
Min nTPM: 30.3
Std nTPM: 14.3
Median nTPM: 63.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 120.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 120.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 108.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 107.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 103.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 99.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 98.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 97.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 92.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 90.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 89.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 88.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 87.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 87.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 85.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 84.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 83.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 83.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 82.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 82.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 82.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 81.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 80.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 79.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 79.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 79.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 79.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 79.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 79.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 78.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 78.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 78.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 77.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 76.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 76.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 75.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 75.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 73.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 72.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 72.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 72.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 72.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 71.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 71.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 71.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 71.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 71.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 70.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 70.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 69.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 69.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 69.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 69.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 69.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 69.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 69.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 69.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 68.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 68.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 68.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 68.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 68.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 68.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 67.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 67.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 67.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 67.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 66.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 66.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 65.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 65.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 65.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 65.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 65.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 65.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 65.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 64.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 64.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 64.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 64.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 64.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 64.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 64.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 64.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 64.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 63.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 63.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 63.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 63.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 63.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 63.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 63.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 63.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 63.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 62.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 62.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 62.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 62.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 62.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 62.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 61.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 61.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 61.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 61.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 60.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 60.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 60.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 59.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 59.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 59.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 59.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 59.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 59.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 59.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 59.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 58.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 58.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 58.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 58.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 58.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 58.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 58.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 58.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 57.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 57.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 57.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 57.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 56.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 56.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 56.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 56.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 56.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 56.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 55.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 55.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 55.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 55.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 54.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 54.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 54.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 54.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 54.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 54.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 54.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 54.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 54.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 53.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 53.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 53.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 53.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 53.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 52.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 52.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 52.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 51.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 51.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 51.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 50.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 50.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 50.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 50.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 50.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 50.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 50.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 50.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 49.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 49.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 49.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 49.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 49.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 49.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 48.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 48.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 48.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 48.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 47.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 46.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 46.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 40.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 31.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 30.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

69.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 69.9
FF:10151-102I7 76 years, female 69.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.4
Pig sample Sample description nTPM
Amygdala
nTPM: 47.4
Samples: 4

Max nTPM: 60.5
Min nTPM: 39.7
Sample A Female 60.5
Sample B Female 39.7
Sample C Male 40.2
Sample D Male 49.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 47.0
Samples: 4

Max nTPM: 52.5
Min nTPM: 42.7
Sample A Male 52.5
Sample B Male 42.7
Sample C Female 43.3
Sample D Female 49.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.9
68667270 Antisense, RP_050201_01_H11, Mouse strain C57BL/6J (56 days, male) 5.9

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