MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.7 nTPM
HPA Brain:76.3 nTPM
GTEx:58.7 nTPM
FANTOM5:81.3 Scaled Tags Per Million
Pig:71.4 nTPM
Mouse:55.5 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 76.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.6
1827 Male, age 72, unknown 76.5
2411 Female, age 72, unknown 74.3
2666 Male, age 74, left hemisphere 72.8
2219 Male, age 76, both hemispheres 71.4
1870 Female, age 42, unknown 71.1
1830 Male, age 51, unknown 69.7
1833 Male, age 53, unknown 69.1
2828 Female, age 72, unknown 68.9
2019 Male, age 18, unknown 61.9
2586 Male, age 75, left hemisphere 60.3
Dorsal raphe nucleus
nTPM: 75.2
2298 Female, age 72, unknown 87.7
2047 Male, age 72, unknown 84.4
2750 Male, age 76, both hemispheres 72.0
2016 Female, age 72, unknown 67.3
1828 Male, age 53, unknown 64.4
Inferior colliculus
nTPM: 72.9
1848 Female, age 42, unknown 76.0
2849 Male, age 72, unknown 73.9
2097 Female, age 72, unknown 73.5
1890 Male, age 53, unknown 68.3
Median raphe nucleus
nTPM: 76.3
2220 Male, age 76, midline 76.3
Periaquaductal grey, anterior
nTPM: 74.9
1947 Male, age 18, unknown 82.5
2502 Female, age 75, unknown 75.0
1795 Male, age 51, unknown 67.2
Periaquaductal grey, dorsal
nTPM: 71.2
1840 Male, age 53, unknown 75.5
2850 Male, age 76, both hemispheres 73.3
2464 Female, age 72, unknown 69.0
1831 Male, age 72, unknown 67.1
Periaquaductal grey, lateral
nTPM: 75.6
2272 Male, age 74, both hemispheres 79.3
2140 Male, age 76, both hemispheres 74.5
2053 Male, age 18, unknown 73.0
Pretectal area
nTPM: 74.8
1816 Male, age 51, unknown 84.6
2273 Male, age 74, both hemispheres 78.9
2407 Male, age 75, both hemispheres 78.8
1815 Male, age 53, unknown 77.1
2007 Male, age 72, unknown 76.8
1944 Female, age 72, unknown 76.3
2825 Male, age 18, unknown 74.2
2316 Male, age 76, right hemisphere 70.3
2224 Female, age 72, unknown 69.9
1817 Female, age 42, unknown 69.2
2667 Female, age 75, unknown 66.6
Red nucleus
nTPM: 67.3
1904 Male, age 53, unknown 72.1
1865 Male, age 51, unknown 71.2
1954 Female, age 42, unknown 70.9
2725 Female, age 75, unknown 69.8
2769 Male, age 72, unknown 67.7
2227 Male, age 72, unknown 67.5
2785 Male, age 18, unknown 66.5
2503 Female, age 72, unknown 66.4
2823 Male, age 76, right hemisphere 66.1
1821 Female, age 72, unknown 66.0
2588 Male, age 74, left hemisphere 63.7
2584 Male, age 75, left hemisphere 59.2
Substantia nigra
nTPM: 73.2
1916 Female, age 42, unknown 83.6
2665 Male, age 74, both hemispheres 80.3
1889 Female, age 72, unknown 78.0
1941 Male, age 53, unknown 76.5
2590 Female, age 75, unknown 74.2
1851 Male, age 51, unknown 73.7
2699 Male, age 18, unknown 69.7
2409 Female, age 72, unknown 68.5
2583 Male, age 75, right hemisphere 66.2
2241 Male, age 72, unknown 61.3
Superior colliculus
nTPM: 72.8
2261 Male, age 18, unknown 81.1
1895 Male, age 76, right hemisphere 79.9
1796 Male, age 53, unknown 77.6
2668 Female, age 75, unknown 76.7
2087 Female, age 72, unknown 71.8
1839 Male, age 51, unknown 70.3
1995 Male, age 72, unknown 69.6
2587 Male, age 74, left hemisphere 68.8
1913 Female, age 42, unknown 67.2
2664 Male, age 75, both hemispheres 65.6
Ventral tegmental area
nTPM: 69.9
2410 Female, age 72, unknown 77.3
2223 Female, age 72, unknown 71.1
2218 Male, age 76, both hemispheres 69.9
1915 Female, age 42, unknown 69.8
2021 Male, age 53, unknown 65.7
1942 Male, age 51, unknown 65.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.7
Samples: 183

Max nTPM: 107.9
Min nTPM: 31.1
Std nTPM: 12.7
Median nTPM: 58.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 107.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 101.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 93.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 89.8
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 89.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 88.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 87.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 86.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 84.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 81.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 80.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 81.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 81.3
FF:10158-103A5 76 years, female 81.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 71.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.9
Samples: 4

Max nTPM: 68.0
Min nTPM: 54.9
Sample A Female 68.0
Sample B Female 60.6
Sample C Male 64.1
Sample D Male 54.9
Midbrain
nTPM: 66.5
Samples: 4

Max nTPM: 78.0
Min nTPM: 52.1
Sample A Female 78.0
Sample B Female 52.1
Sample C Male 76.7
Sample D Male 59.2
Periaqueductal gray
nTPM: 55.9
Samples: 3

Max nTPM: 62.8
Min nTPM: 50.5
Sample B Female 54.4
Sample C Male 62.8
Sample D Male 50.5
Superior colliculi
nTPM: 71.5
Samples: 4

Max nTPM: 75.9
Min nTPM: 66.3
Sample A Female 72.6
Sample B Female 75.9
Sample C Male 71.0
Sample D Male 66.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 55.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.5
Samples: 4

Max nTPM: 59.4
Min nTPM: 48.4
Sample A Male 48.4
Sample B Male 59.4
Sample C Female 58.6
Sample D Female 55.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
68667270 Antisense, RP_050201_01_H11, Mouse strain C57BL/6J (56 days, male) 2.3

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