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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
70.1
nTPM
HPA Brain:
37.9
nTPM
GTEx:
70.1
nTPM
FANTOM5:
65.8
Scaled Tags Per Million
Pig:
130.4
nTPM
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA048712
Glial cells
Not detected
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
37.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 32.9
1898
Male, age 80, left hemisphere
44.7
2621
Female, age 67, right hemisphere
34.2
1855
Male, age 76, left hemisphere
33.1
1911
Female, age 85, right hemisphere
30.4
2529
Female, age 94, left hemisphere
29.6
2148
Female, age 91, left hemisphere
25.6
Dentate gyrus nTPM: 30.9
2010
Male, age 76, both hemispheres
38.2
1927
Female, age 91, both hemispheres
37.8
2528
Male, age 74, both hemispheres
29.4
2530
Female, age 94, left hemisphere
27.4
2246
Female, age 85, both hemispheres
27.3
2531
Female, age 67, both hemispheres
25.2
Entorhinal gyrus nTPM: 28.9
1938
Female, age 85, left hemisphere
35.6
2764
Male, age 80, right hemisphere
34.8
1787
Male, age 76, left hemisphere
28.8
2117
Female, age 91, right hemisphere
27.0
2686
Male, age 75, right hemisphere
24.5
2613
Female, age 94, left hemisphere
22.9
Hippocampus, CA1 nTPM: 36.3
2749
Male, age 80, left hemisphere
53.0
1873
Female, age 85, both hemispheres
41.4
2527
Male, age 74, both hemispheres
32.4
2045
Male, age 76, both hemispheres
28.9
2082
Female, age 91, right hemisphere
25.9
Hippocampus, CA2 nTPM: 35.1
1892
Male, age 76, both hemispheres
46.3
1963
Male, age 80, left hemisphere
44.0
2249
Male, age 74, both hemispheres
39.5
1940
Female, age 85, left hemisphere
29.4
2437
Female, age 94, left hemisphere
26.8
2113
Female, age 91, right hemisphere
24.5
Hippocampus, CA3 nTPM: 32.9
2137
Male, age 80, left hemisphere
45.2
1867
Male, age 76, both hemispheres
42.4
2436
Male, age 74, both hemispheres
34.1
1891
Female, age 85, both hemispheres
30.3
2620
Female, age 94, left hemisphere
25.8
2861
Female, age 67, both hemispheres
19.9
Parahippocampal cortex nTPM: 31.4
1850
Male, age 80, both hemispheres
40.2
1933
Female, age 85, both hemispheres
36.2
2250
Female, age 67, right hemisphere
34.9
1990
Female, age 91, right hemisphere
34.0
2018
Male, age 76, both hemispheres
33.4
2245
Female, age 91, both hemispheres
31.0
2693
Female, age 94, both hemispheres
29.4
2532
Female, age 72, left hemisphere
27.2
2622
Female, age 67, right hemisphere
24.6
2692
Male, age 74, both hemispheres
23.6
Perirhinal gyrus nTPM: 37.9
1847
Female, age 91, left hemisphere
46.3
1841
Female, age 85, right hemisphere
43.4
1794
Male, age 80, right hemisphere
38.5
2521
Female, age 94, right hemisphere
30.9
2848
Male, age 76, right hemisphere
30.5
Subiculum nTPM: 30.9
1977
Female, age 85, both hemispheres
35.9
1901
Male, age 80, both hemispheres
34.7
2042
Male, age 76, both hemispheres
31.6
2438
Female, age 94, left hemisphere
29.3
2619
Male, age 74, both hemispheres
27.1
2729
Female, age 91, right hemisphere
26.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
70.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 70.1
Samples: 197
Max nTPM: 212.9
Min nTPM: 37.0
Std nTPM: 21.1
Median nTPM: 65.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
212.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
144.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
113.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
111.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
111.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
109.9
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
108.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
106.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
106.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
105.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
104.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
104.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
101.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
101.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
100.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
100.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
100.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
99.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
98.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
98.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
98.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
97.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
96.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
96.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
95.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
94.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
91.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
90.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
89.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
89.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
88.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
88.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
87.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
86.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
86.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
86.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
85.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
85.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
85.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
85.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
85.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
84.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
83.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
83.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
83.5
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
83.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
83.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
81.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
80.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
80.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
80.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
79.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
78.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
78.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
78.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
78.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
78.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
77.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
77.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
77.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
76.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
76.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
76.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
75.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
75.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
75.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
75.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
74.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
74.8
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
74.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
74.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
74.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
74.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
73.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
73.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
73.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
73.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
73.1
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
72.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
72.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
72.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
72.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
72.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
71.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
71.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
71.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
70.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
69.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
69.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
69.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
69.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
68.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
68.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
68.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
67.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
67.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
67.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
66.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
65.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
65.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
65.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
65.0
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
64.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
64.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
64.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
63.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
63.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
63.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
63.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
63.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
62.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
62.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
61.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
61.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
61.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
61.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
61.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
61.1
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
61.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
60.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
60.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
60.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
60.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
59.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
59.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
59.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
59.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
59.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
59.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
59.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
58.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
58.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
58.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
58.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
58.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
58.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
58.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
58.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
58.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
57.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
57.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
57.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
57.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
57.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
56.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
56.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
56.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
55.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
55.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
55.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
55.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
55.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
54.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
54.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
53.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
53.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
53.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
52.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
52.6
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
51.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
51.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
51.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
51.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
51.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
50.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
50.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
50.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
50.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
50.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
49.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
49.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
48.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
48.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
48.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
48.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
48.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
48.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
48.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
47.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
47.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
47.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
47.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
46.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
46.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
46.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
46.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
45.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
44.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
44.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
42.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
42.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
41.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
40.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
39.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
39.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
38.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
37.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.