MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:90.5 nTPM
HPA Brain:43.6 nTPM
GTEx:90.5 nTPM
FANTOM5:55.3 Scaled Tags Per Million
Pig:221.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.1
1827 Male, age 72, unknown 36.1
2411 Female, age 72, unknown 35.8
1833 Male, age 53, unknown 33.6
1870 Female, age 42, unknown 33.3
2219 Male, age 76, both hemispheres 33.0
2586 Male, age 75, left hemisphere 29.9
2019 Male, age 18, unknown 29.4
1830 Male, age 51, unknown 27.3
2828 Female, age 72, unknown 26.5
2666 Male, age 74, left hemisphere 26.1
Dorsal raphe nucleus
nTPM: 36.4
2298 Female, age 72, unknown 48.0
2750 Male, age 76, both hemispheres 36.9
2047 Male, age 72, unknown 35.1
1828 Male, age 53, unknown 32.1
2016 Female, age 72, unknown 29.7
Inferior colliculus
nTPM: 33.7
2097 Female, age 72, unknown 38.7
1890 Male, age 53, unknown 34.3
1848 Female, age 42, unknown 33.4
2849 Male, age 72, unknown 28.2
Median raphe nucleus
nTPM: 43.6
2220 Male, age 76, midline 43.6
Periaquaductal grey, anterior
nTPM: 35.6
1947 Male, age 18, unknown 39.5
2502 Female, age 75, unknown 34.6
1795 Male, age 51, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 33.3
1840 Male, age 53, unknown 37.0
2850 Male, age 76, both hemispheres 34.0
2464 Female, age 72, unknown 33.1
1831 Male, age 72, unknown 29.0
Periaquaductal grey, lateral
nTPM: 29.4
2053 Male, age 18, unknown 30.0
2140 Male, age 76, both hemispheres 29.6
2272 Male, age 74, both hemispheres 28.6
Pretectal area
nTPM: 36.5
1816 Male, age 51, unknown 45.2
1944 Female, age 72, unknown 43.9
1817 Female, age 42, unknown 41.5
2007 Male, age 72, unknown 41.3
2224 Female, age 72, unknown 38.1
2667 Female, age 75, unknown 37.7
1815 Male, age 53, unknown 36.4
2273 Male, age 74, both hemispheres 30.7
2825 Male, age 18, unknown 29.8
2407 Male, age 75, both hemispheres 29.6
2316 Male, age 76, right hemisphere 26.8
Red nucleus
nTPM: 28.0
1821 Female, age 72, unknown 37.2
2725 Female, age 75, unknown 30.3
2503 Female, age 72, unknown 29.2
2584 Male, age 75, left hemisphere 28.6
2823 Male, age 76, right hemisphere 28.3
1904 Male, age 53, unknown 28.2
1954 Female, age 42, unknown 27.5
2785 Male, age 18, unknown 26.8
2769 Male, age 72, unknown 26.2
1865 Male, age 51, unknown 26.0
2227 Male, age 72, unknown 26.0
2588 Male, age 74, left hemisphere 22.0
Substantia nigra
nTPM: 42.8
1916 Female, age 42, unknown 59.0
2241 Male, age 72, unknown 58.5
1851 Male, age 51, unknown 52.0
2699 Male, age 18, unknown 44.7
1889 Female, age 72, unknown 44.3
1941 Male, age 53, unknown 42.6
2409 Female, age 72, unknown 39.3
2665 Male, age 74, both hemispheres 31.5
2590 Female, age 75, unknown 30.4
2583 Male, age 75, right hemisphere 26.0
Superior colliculus
nTPM: 31.8
2087 Female, age 72, unknown 40.0
2668 Female, age 75, unknown 38.4
2587 Male, age 74, left hemisphere 34.3
2261 Male, age 18, unknown 33.6
1796 Male, age 53, unknown 33.0
1895 Male, age 76, right hemisphere 32.0
1913 Female, age 42, unknown 30.1
1839 Male, age 51, unknown 27.8
1995 Male, age 72, unknown 25.9
2664 Male, age 75, both hemispheres 22.7
Ventral tegmental area
nTPM: 42.7
2410 Female, age 72, unknown 51.6
1915 Female, age 42, unknown 49.5
2218 Male, age 76, both hemispheres 49.4
1942 Male, age 51, unknown 39.6
2021 Male, age 53, unknown 34.0
2223 Female, age 72, unknown 32.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 90.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 90.5
Samples: 183

Max nTPM: 180.2
Min nTPM: 46.6
Std nTPM: 27.1
Median nTPM: 87.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 180.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 175.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 164.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 163.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 161.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 155.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 150.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 149.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 146.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 146.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 135.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.3
FF:10158-103A5 76 years, female 55.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 221.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 167.8
Samples: 4

Max nTPM: 256.4
Min nTPM: 96.7
Sample A Female 256.4
Sample B Female 163.2
Sample C Male 154.8
Sample D Male 96.7
Midbrain
nTPM: 179.6
Samples: 4

Max nTPM: 199.2
Min nTPM: 161.3
Sample A Female 161.3
Sample B Female 174.4
Sample C Male 199.2
Sample D Male 183.4
Periaqueductal gray
nTPM: 131.2
Samples: 3

Max nTPM: 134.4
Min nTPM: 128.7
Sample B Female 130.4
Sample C Male 134.4
Sample D Male 128.7
Superior colliculi
nTPM: 221.8
Samples: 4

Max nTPM: 250.8
Min nTPM: 175.0
Sample A Female 243.2
Sample B Female 218.3
Sample C Male 250.8
Sample D Male 175.0

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