MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:188.5 nTPM
HPA Brain:138.3 nTPM
GTEx:188.5 nTPM
FANTOM5:84.0 Scaled Tags Per Million
Pig:40.6 nTPM
Mouse:18.9 nTPM
Allen mouse:3.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 138.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.2
2666 Male, age 74, left hemisphere 155.8
2019 Male, age 18, unknown 134.9
2828 Female, age 72, unknown 121.2
1870 Female, age 42, unknown 109.2
2411 Female, age 72, unknown 109.0
2586 Male, age 75, left hemisphere 107.4
1833 Male, age 53, unknown 94.2
1830 Male, age 51, unknown 91.6
1827 Male, age 72, unknown 74.7
2219 Male, age 76, both hemispheres 53.7
Dorsal raphe nucleus
nTPM: 101.1
2750 Male, age 76, both hemispheres 108.7
1828 Male, age 53, unknown 104.8
2298 Female, age 72, unknown 100.2
2016 Female, age 72, unknown 98.6
2047 Male, age 72, unknown 93.1
Inferior colliculus
nTPM: 101.7
2097 Female, age 72, unknown 129.3
1890 Male, age 53, unknown 110.2
1848 Female, age 42, unknown 102.6
2849 Male, age 72, unknown 64.7
Median raphe nucleus
nTPM: 81.5
2220 Male, age 76, midline 81.5
Periaquaductal grey, anterior
nTPM: 107.6
2502 Female, age 75, unknown 124.6
1795 Male, age 51, unknown 102.5
1947 Male, age 18, unknown 95.8
Periaquaductal grey, dorsal
nTPM: 74.2
2464 Female, age 72, unknown 96.7
1831 Male, age 72, unknown 93.2
1840 Male, age 53, unknown 61.6
2850 Male, age 76, both hemispheres 45.2
Periaquaductal grey, lateral
nTPM: 72.4
2053 Male, age 18, unknown 79.9
2272 Male, age 74, both hemispheres 78.9
2140 Male, age 76, both hemispheres 58.4
Pretectal area
nTPM: 84.1
2007 Male, age 72, unknown 123.8
1817 Female, age 42, unknown 122.7
2316 Male, age 76, right hemisphere 98.3
1815 Male, age 53, unknown 89.3
1816 Male, age 51, unknown 86.2
2667 Female, age 75, unknown 79.5
1944 Female, age 72, unknown 79.3
2224 Female, age 72, unknown 73.8
2825 Male, age 18, unknown 65.6
2273 Male, age 74, both hemispheres 60.6
2407 Male, age 75, both hemispheres 46.0
Red nucleus
nTPM: 138.3
2769 Male, age 72, unknown 170.9
2588 Male, age 74, left hemisphere 167.7
2227 Male, age 72, unknown 164.7
1954 Female, age 42, unknown 161.6
1904 Male, age 53, unknown 152.6
1821 Female, age 72, unknown 139.8
2785 Male, age 18, unknown 138.4
2503 Female, age 72, unknown 137.3
1865 Male, age 51, unknown 119.3
2823 Male, age 76, right hemisphere 116.5
2584 Male, age 75, left hemisphere 95.6
2725 Female, age 75, unknown 95.6
Substantia nigra
nTPM: 90.0
2665 Male, age 74, both hemispheres 163.2
1851 Male, age 51, unknown 106.6
1916 Female, age 42, unknown 101.6
1889 Female, age 72, unknown 96.3
2590 Female, age 75, unknown 80.9
2583 Male, age 75, right hemisphere 77.8
2699 Male, age 18, unknown 76.5
1941 Male, age 53, unknown 74.6
2409 Female, age 72, unknown 65.4
2241 Male, age 72, unknown 57.4
Superior colliculus
nTPM: 90.6
2668 Female, age 75, unknown 118.0
2587 Male, age 74, left hemisphere 108.3
2087 Female, age 72, unknown 107.8
1995 Male, age 72, unknown 97.4
2261 Male, age 18, unknown 91.3
1913 Female, age 42, unknown 85.4
1796 Male, age 53, unknown 83.5
1839 Male, age 51, unknown 83.4
1895 Male, age 76, right hemisphere 72.3
2664 Male, age 75, both hemispheres 59.0
Ventral tegmental area
nTPM: 98.2
1942 Male, age 51, unknown 104.7
2021 Male, age 53, unknown 103.8
2223 Female, age 72, unknown 100.3
2410 Female, age 72, unknown 96.1
2218 Male, age 76, both hemispheres 94.5
1915 Female, age 42, unknown 89.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 188.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 188.5
Samples: 183

Max nTPM: 850.0
Min nTPM: 26.2
Std nTPM: 126.6
Median nTPM: 156.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 850.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 824.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 664.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 598.3
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 555.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 548.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 466.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 439.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 437.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 407.9
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 396.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.0
FF:10158-103A5 76 years, female 84.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 40.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.1
Samples: 4

Max nTPM: 58.3
Min nTPM: 24.7
Sample A Female 41.6
Sample B Female 58.3
Sample C Male 24.7
Sample D Male 35.6
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 51.5
Min nTPM: 23.3
Sample A Female 51.5
Sample B Female 25.4
Sample C Male 36.1
Sample D Male 23.3
Periaqueductal gray
nTPM: 15.7
Samples: 3

Max nTPM: 16.9
Min nTPM: 13.4
Sample B Female 16.9
Sample C Male 16.7
Sample D Male 13.4
Superior colliculi
nTPM: 40.6
Samples: 4

Max nTPM: 46.4
Min nTPM: 35.0
Sample A Female 46.4
Sample B Female 35.0
Sample C Male 40.0
Sample D Male 40.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 24.1
Min nTPM: 16.1
Sample A Male 24.1
Sample B Male 18.4
Sample C Female 16.1
Sample D Female 17.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
79490120 Antisense, RP_071018_01_F08, Mouse strain C57BL/6J (56 days, male) 3.0
79360268 Antisense, RP_071018_01_F08, Mouse strain C57BL/6J (56 days, male) 2.4

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