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  • NAP1L1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:235.0 nTPM
HPA Brain:291.6 nTPM
GTEx:235.0 nTPM
FANTOM5:277.3 Scaled Tags Per Million
Pig:160.4 nTPM
Mouse:252.5 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

291.6
Sample id Sample description nTPM
Amygdala
nTPM: 251.1
2695 Female, age 67, right hemisphere 346.0
2514 Male, age 75, right hemisphere 239.1
2517 Female, age 94, left hemisphere 232.0
1987 Female, age 91, left hemisphere 219.6
2814 Male, age 76, right hemisphere 218.9
Basal amygdala
nTPM: 232.6
2827 Female, age 67, right hemisphere 377.9
2685 Female, age 94, left hemisphere 236.2
2609 Male, age 75, right hemisphere 223.5
2110 Male, age 80, left hemisphere 199.3
1955 Male, age 76, both hemispheres 191.4
2243 Female, age 91, right hemisphere 167.3
Central amygdala
nTPM: 291.6
2826 Female, age 94, left hemisphere 589.2
2515 Male, age 75, right hemisphere 287.7
2239 Male, age 80, left hemisphere 199.8
1905 Male, age 76, both hemispheres 192.1
2701 Female, age 91, right hemisphere 189.4
Corticomedial amygdala
nTPM: 198.6
2535 Female, age 67, right hemisphere 233.5
2428 Male, age 75, right hemisphere 220.0
2829 Male, age 80, left hemisphere 202.9
2240 Male, age 76, both hemispheres 201.6
2242 Female, age 91, right hemisphere 170.2
2429 Female, age 94, left hemisphere 163.5
Lateral amygdala
nTPM: 284.2
2830 Female, age 67, right hemisphere 484.2
2534 Female, age 94, left hemisphere 334.0
2516 Male, age 75, right hemisphere 316.8
1883 Male, age 76, both hemispheres 210.7
2256 Male, age 80, left hemisphere 205.7
2255 Female, age 91, right hemisphere 153.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 235.0
Samples: 181

Max nTPM: 506.4
Min nTPM: 129.3
Std nTPM: 70.6
Median nTPM: 219.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 506.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 464.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 461.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 414.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 413.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 412.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 404.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 392.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 390.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 388.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 386.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 376.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 367.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 345.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 343.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 339.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 334.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 325.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 321.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 319.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 318.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 317.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 311.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 309.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 306.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 305.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 303.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 302.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 299.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 299.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 297.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 294.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 290.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 288.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 287.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 286.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 284.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 284.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 284.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 282.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 281.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 279.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 278.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 274.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 269.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 267.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 266.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 263.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 263.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 262.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 260.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 260.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 259.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 257.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 257.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 256.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 256.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 256.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 255.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 254.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 254.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 254.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 247.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 247.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 246.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 246.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 243.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 240.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 238.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 233.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 233.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 232.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 232.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 232.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 231.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 231.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 230.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 228.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 227.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 227.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 227.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 227.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 227.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 225.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 224.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 223.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 222.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 221.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 221.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 220.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 219.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 217.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 217.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 216.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 216.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 215.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 214.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 214.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 213.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 211.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 211.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 210.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 209.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 208.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 207.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 206.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 204.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 204.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 203.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 203.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 202.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 202.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 200.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 199.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 199.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 199.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 197.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 196.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 195.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 195.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 194.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 193.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 192.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 191.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 189.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 189.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 188.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 187.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 186.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 185.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 185.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 184.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 183.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 182.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 182.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 182.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 181.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 181.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 181.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 180.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 180.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 180.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 179.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 179.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 178.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 177.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 176.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 175.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 174.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 173.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 173.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 173.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 172.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 171.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 169.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 167.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 166.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 164.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 164.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 163.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 161.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 160.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 159.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 158.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 158.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 158.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 158.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 157.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 156.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 155.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 153.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 152.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 152.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 150.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 150.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 147.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 147.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 145.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 135.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 134.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 129.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

277.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 277.3
FF:10151-102I7 76 years, female 277.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.4
Pig sample Sample description nTPM
Amygdala
nTPM: 160.4
Samples: 4

Max nTPM: 193.3
Min nTPM: 137.3
Sample A Female 171.2
Sample B Female 193.3
Sample C Male 137.3
Sample D Male 139.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 252.5
Samples: 4

Max nTPM: 266.9
Min nTPM: 228.6
Sample A Male 259.5
Sample B Male 266.9
Sample C Female 228.6
Sample D Female 254.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.9
75198178 Antisense, RP_060502_02_B04, Mouse strain C57BL/6J (56 days, male) 1.9

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