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  • NAP1L1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:446.9 nTPM
HPA Brain:393.4 nTPM
GTEx:446.9 nTPM
FANTOM5:520.8 Scaled Tags Per Million
Pig:340.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

393.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 280.3
2565 Male, age 75, midline 316.2
2048 Male, age 55, midline 312.9
1981 Female, age 72, midline 280.7
2194 Female, age 79, both hemispheres 247.5
2816 Male, age 47, midline 244.3
Cervical spinal cord, dorsal horn
nTPM: 250.8
2173 Female, age 72, unknown 343.2
2296 Male, age 66, both hemispheres 281.6
2069 Male, age 47, both hemispheres 278.1
1877 Male, age 55, unknown 248.9
2297 Male, age 75, both hemispheres 178.7
2721 Male, age 90, both hemispheres 174.5
Cervical spinal cord, ventral horn
nTPM: 393.4
2480 Male, age 75, both hemispheres 621.0
2809 Male, age 90, both hemispheres 484.2
2295 Male, age 66, both hemispheres 404.7
2098 Female, age 72, unknown 350.5
2068 Male, age 55, unknown 268.1
2820 Female, age 79, both hemispheres 232.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

446.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 446.9
Samples: 204

Max nTPM: 1039.4
Min nTPM: 187.4
Std nTPM: 148.0
Median nTPM: 421.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1039.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1033.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 859.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 857.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 833.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 815.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 813.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 764.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 749.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 717.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 715.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 713.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 712.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 704.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 688.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 687.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 684.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 663.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 663.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 649.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 639.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 629.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 625.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 620.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 610.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 598.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 595.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 592.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 592.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 588.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 588.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 579.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 571.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 567.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 566.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 565.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 565.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 564.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 564.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 560.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 551.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 548.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 541.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 538.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 536.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 532.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 527.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 526.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 526.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 524.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 524.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 514.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 509.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 508.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 508.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 507.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 504.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 503.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 502.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 500.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 499.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 498.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 493.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 490.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 489.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 489.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 487.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 486.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 484.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 484.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 483.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 479.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 477.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 477.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 476.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 475.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 471.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 471.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 469.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 467.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 467.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 466.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 465.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 459.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 458.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 458.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 456.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 454.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 450.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 449.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 448.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 447.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 447.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 446.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 442.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 441.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 441.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 439.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 435.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 435.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 422.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 422.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 421.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 416.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 414.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 412.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 410.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 406.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 404.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 404.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 397.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 397.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 397.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 396.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 395.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 393.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 392.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 392.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 391.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 390.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 389.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 385.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 384.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 383.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 382.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 381.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 379.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 374.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 373.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 372.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 372.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 368.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 367.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 363.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 362.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 362.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 361.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 359.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 358.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 358.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 356.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 355.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 354.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 354.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 353.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 353.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 351.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 350.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 346.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 345.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 344.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 343.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 340.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 337.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 336.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 334.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 333.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 332.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 330.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 330.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 327.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 326.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 326.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 326.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 326.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 325.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 322.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 319.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 317.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 316.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 315.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 315.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 315.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 314.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 313.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 313.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 312.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 312.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 311.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 310.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 305.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 296.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 291.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 289.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 287.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 285.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 279.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 279.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 269.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 263.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 262.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 261.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 260.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 250.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 247.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 246.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 245.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 234.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 222.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 217.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 217.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 216.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 209.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 187.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

520.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 520.8
FF:10181-103D1 60 years, female 575.9
FF:10159-103A6 76 years, female 465.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

340.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 307.2
Samples: 4

Max nTPM: 378.5
Min nTPM: 255.9
Sample A Female 255.9
Sample B Female 378.5
Sample C Male 324.9
Sample D Male 269.6
Ventral spinal cord
nTPM: 340.4
Samples: 4

Max nTPM: 429.7
Min nTPM: 274.6
Sample A Female 317.2
Sample B Female 340.2
Sample C Male 274.6
Sample D Male 429.7

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