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RPL23A
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  • RPL23A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1192.5 nTPM
HPA Brain:295.8 nTPM
GTEx:1192.5 nTPM
FANTOM5:13.0 Scaled Tags Per Million
Pig:1986.3 nTPM
Mouse:1125.0 nTPM
Allen mouse:12.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

295.8
Sample id Sample description nTPM
Amygdala
nTPM: 293.9
2695 Female, age 67, right hemisphere 361.2
2514 Male, age 75, right hemisphere 312.9
2517 Female, age 94, left hemisphere 276.3
2814 Male, age 76, right hemisphere 267.4
1987 Female, age 91, left hemisphere 251.5
Basal amygdala
nTPM: 231.1
2827 Female, age 67, right hemisphere 332.7
2609 Male, age 75, right hemisphere 262.6
2110 Male, age 80, left hemisphere 240.0
2685 Female, age 94, left hemisphere 200.0
1955 Male, age 76, both hemispheres 185.1
2243 Female, age 91, right hemisphere 166.3
Central amygdala
nTPM: 279.8
2826 Female, age 94, left hemisphere 453.5
2515 Male, age 75, right hemisphere 313.6
1905 Male, age 76, both hemispheres 226.5
2239 Male, age 80, left hemisphere 213.8
2701 Female, age 91, right hemisphere 191.5
Corticomedial amygdala
nTPM: 220.8
2428 Male, age 75, right hemisphere 276.1
2829 Male, age 80, left hemisphere 241.7
2535 Female, age 67, right hemisphere 214.9
2429 Female, age 94, left hemisphere 209.7
2240 Male, age 76, both hemispheres 192.3
2242 Female, age 91, right hemisphere 189.9
Lateral amygdala
nTPM: 295.8
2830 Female, age 67, right hemisphere 444.7
2516 Male, age 75, right hemisphere 385.1
2534 Female, age 94, left hemisphere 316.7
2256 Male, age 80, left hemisphere 240.8
1883 Male, age 76, both hemispheres 199.4
2255 Female, age 91, right hemisphere 188.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1192.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1192.5
Samples: 181

Max nTPM: 3623.4
Min nTPM: 527.3
Std nTPM: 457.8
Median nTPM: 1094.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3623.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3071.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2997.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2916.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2360.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2265.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2074.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2009.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2007.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1975.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1962.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1954.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1930.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1896.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1765.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1732.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1720.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1706.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1698.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1694.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1685.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1683.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1607.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1605.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1595.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1580.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1567.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1564.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1560.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1551.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1533.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1531.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1513.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1473.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1465.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1465.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1453.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1453.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1435.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1431.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1414.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1389.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1378.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1366.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1361.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1353.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1337.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1332.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1312.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1291.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1278.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1277.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1274.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1274.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1273.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1267.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1263.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1253.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1253.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1238.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1236.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1235.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1229.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1224.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1219.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1218.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1213.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1206.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1205.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1191.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1183.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1180.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1176.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1171.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1162.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1146.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1145.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1144.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1144.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1141.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1139.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1136.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1130.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1129.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1125.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1115.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1112.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1101.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1100.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1094.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1094.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1089.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1088.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1088.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1072.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1065.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1062.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1062.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1062.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1055.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1048.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1025.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1022.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1021.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1021.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1013.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1013.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1011.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1008.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1008.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 999.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 988.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 986.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 982.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 981.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 977.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 974.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 974.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 972.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 971.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 969.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 960.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 954.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 952.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 949.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 946.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 931.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 925.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 924.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 924.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 921.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 913.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 910.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 903.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 901.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 901.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 893.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 893.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 884.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 884.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 883.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 880.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 876.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 873.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 872.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 866.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 864.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 854.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 844.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 844.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 839.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 838.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 832.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 830.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 825.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 818.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 817.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 817.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 807.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 799.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 795.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 778.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 773.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 764.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 763.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 762.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 754.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 746.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 739.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 728.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 718.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 709.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 704.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 671.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 623.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 617.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 604.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 598.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 569.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 538.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 527.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

13.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 13.0
FF:10151-102I7 76 years, female 13.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1986.3
Pig sample Sample description nTPM
Amygdala
nTPM: 1986.4
Samples: 4

Max nTPM: 2560.5
Min nTPM: 1210.1
Sample A Female 2560.5
Sample B Female 2283.2
Sample C Male 1891.6
Sample D Male 1210.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1125.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 1125.0
Samples: 4

Max nTPM: 1216.9
Min nTPM: 1032.8
Sample A Male 1032.8
Sample B Male 1137.1
Sample C Female 1216.9
Sample D Female 1113.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.3
100144177 Antisense, RP_110407_03_C10, Mouse strain C57BL/6J (56 days, male) 12.3

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