On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1334.9
nTPM
HPA Brain:
298.3
nTPM
GTEx:
1334.9
nTPM
FANTOM5:
9.8
Scaled Tags Per Million
Macaque:
1162.1
nTPM
Mouse:
1006.3
nTPM
Pig:
2422.8
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
298.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 253.9
2666
Male, age 74, left hemisphere
300.0
1870
Female, age 42, unknown
278.6
2411
Female, age 72, unknown
269.8
2019
Male, age 18, unknown
267.2
2828
Female, age 72, unknown
261.5
2586
Male, age 75, left hemisphere
251.9
1830
Male, age 51, unknown
241.2
1827
Male, age 72, unknown
231.1
1833
Male, age 53, unknown
219.2
2219
Male, age 76, both hemispheres
218.6
Dorsal raphe nucleus nTPM: 269.6
2298
Female, age 72, unknown
296.1
2750
Male, age 76, both hemispheres
289.5
2016
Female, age 72, unknown
272.2
1828
Male, age 53, unknown
267.2
2047
Male, age 72, unknown
223.0
Inferior colliculus nTPM: 254.3
2097
Female, age 72, unknown
298.2
1890
Male, age 53, unknown
282.1
1848
Female, age 42, unknown
226.1
2849
Male, age 72, unknown
210.8
Median raphe nucleus nTPM: 248.6
2220
Male, age 76, midline
248.6
Periaquaductal grey, anterior nTPM: 265.7
2502
Female, age 75, unknown
334.2
1795
Male, age 51, unknown
231.7
1947
Male, age 18, unknown
231.1
Periaquaductal grey, dorsal nTPM: 236.1
1840
Male, age 53, unknown
259.1
2464
Female, age 72, unknown
250.2
1831
Male, age 72, unknown
230.4
2850
Male, age 76, both hemispheres
204.7
Periaquaductal grey, lateral nTPM: 223.7
2053
Male, age 18, unknown
242.8
2140
Male, age 76, both hemispheres
238.7
2272
Male, age 74, both hemispheres
189.7
Pretectal area nTPM: 235.5
2316
Male, age 76, right hemisphere
312.3
2224
Female, age 72, unknown
266.3
2825
Male, age 18, unknown
249.3
1817
Female, age 42, unknown
244.4
2007
Male, age 72, unknown
240.3
1815
Male, age 53, unknown
239.6
1816
Male, age 51, unknown
234.1
2667
Female, age 75, unknown
205.4
2407
Male, age 75, both hemispheres
202.4
1944
Female, age 72, unknown
200.6
2273
Male, age 74, both hemispheres
195.9
Red nucleus nTPM: 289.4
2503
Female, age 72, unknown
338.6
1904
Male, age 53, unknown
320.3
1865
Male, age 51, unknown
318.3
1821
Female, age 72, unknown
317.6
2227
Male, age 72, unknown
307.2
2769
Male, age 72, unknown
302.9
2588
Male, age 74, left hemisphere
293.8
1954
Female, age 42, unknown
273.9
2785
Male, age 18, unknown
264.1
2823
Male, age 76, right hemisphere
250.2
2584
Male, age 75, left hemisphere
245.0
2725
Female, age 75, unknown
240.3
Substantia nigra nTPM: 298.3
1851
Male, age 51, unknown
375.4
2241
Male, age 72, unknown
359.9
2409
Female, age 72, unknown
344.5
2665
Male, age 74, both hemispheres
341.1
2699
Male, age 18, unknown
314.4
1916
Female, age 42, unknown
294.5
2590
Female, age 75, unknown
272.7
1889
Female, age 72, unknown
270.1
1941
Male, age 53, unknown
222.4
2583
Male, age 75, right hemisphere
187.8
Superior colliculus nTPM: 268.1
2587
Male, age 74, left hemisphere
304.4
2668
Female, age 75, unknown
303.6
1995
Male, age 72, unknown
299.0
1913
Female, age 42, unknown
294.7
1796
Male, age 53, unknown
272.2
2087
Female, age 72, unknown
262.3
2261
Male, age 18, unknown
247.3
2664
Male, age 75, both hemispheres
234.0
1839
Male, age 51, unknown
231.9
1895
Male, age 76, right hemisphere
231.5
Ventral tegmental area nTPM: 280.6
1915
Female, age 42, unknown
324.5
2223
Female, age 72, unknown
304.8
2021
Male, age 53, unknown
293.5
2410
Female, age 72, unknown
270.6
1942
Male, age 51, unknown
265.4
2218
Male, age 76, both hemispheres
224.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1334.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1334.9
Samples: 183
Max nTPM: 3048.1
Min nTPM: 453.3
Std nTPM: 465.7
Median nTPM: 1237.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
3048.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2890.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2839.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2561.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2492.1
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
2399.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
2355.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
2247.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
2227.9
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
2200.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
2199.1
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
2116.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
2107.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
2029.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
2027.2
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
2000.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1955.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1931.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1926.7
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
1895.3
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1882.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1847.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
1837.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1828.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1827.9
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1825.0
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1807.5
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1802.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1785.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1762.9
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1757.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1736.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1705.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1694.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1675.9
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1675.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1670.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1648.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1638.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1636.0
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1628.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1621.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1614.0
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1609.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1590.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1589.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1581.7
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1545.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1545.7
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1544.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1540.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1533.3
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1530.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1527.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1514.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1504.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1500.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1494.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1488.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1488.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1488.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1486.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1483.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1482.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1477.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1471.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1466.4
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
1465.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1462.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1453.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1451.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1446.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1429.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1419.8
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
1419.8
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
1419.1
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1397.2
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1393.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1372.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1368.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
1351.1
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
1348.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1347.6
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
1330.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1326.9
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1325.1
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1287.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1279.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1269.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1264.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1242.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1237.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1231.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1229.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1226.7
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1223.3
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1216.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1214.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1214.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1203.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1199.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1199.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1193.0
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1187.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1187.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1182.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1180.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1178.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1172.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1145.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1141.6
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1140.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1139.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1136.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1133.3
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1131.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1102.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1099.9
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1099.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1096.3
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
1093.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1078.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1068.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1067.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1062.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1059.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1058.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1056.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1049.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1042.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1029.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1012.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1010.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1007.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1006.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1004.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1000.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
988.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
985.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
956.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
951.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
941.5
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
941.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
939.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
938.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
927.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
924.9
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
922.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
907.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
892.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
883.0
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
882.1
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
881.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
878.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
875.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
871.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
870.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
866.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
859.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
859.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
858.3
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
852.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
848.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
840.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
835.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
826.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
824.7
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
824.2
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
808.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
795.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
765.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
750.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
729.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
726.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
722.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
705.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
678.2
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
678.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
646.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
638.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
611.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
454.1
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
453.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1162.1
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 1162.1
Samples: 1
Max nTPM: 1162.1
Min nTPM: 1162.1
Sample A
1162.1
Midbrain nTPM: 759.0
Samples: 1
Max nTPM: 759.0
Min nTPM: 759.0
Sample A
759.0
Superior colliculi nTPM: 586.3
Samples: 1
Max nTPM: 586.3
Min nTPM: 586.3
Sample A
586.3
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2422.8
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 2422.8
Samples: 3
Max nTPM: 2696.7
Min nTPM: 2186.3
Sample A
Female
2696.7
Sample B
Female
2385.5
Sample C
Male
2186.3
Midbrain nTPM: 2032.8
Samples: 3
Max nTPM: 2526.4
Min nTPM: 1770.6
Sample B
Female
2526.4
Sample C
Male
1801.4
Sample D
Male
1770.6
Periaqueductal gray nTPM: 2028.1
Samples: 3
Max nTPM: 2191.5
Min nTPM: 1946.1
Sample B
Female
1946.6
Sample C
Male
2191.5
Sample D
Male
1946.1
Superior colliculi nTPM: 2274.5
Samples: 4
Max nTPM: 2878.2
Min nTPM: 1804.3
Sample A
Female
2878.2
Sample B
Female
1804.3
Sample C
Male
2230.3
Sample D
Male
2185.3
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1006.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 1006.3
Samples: 4
Max nTPM: 1086.6
Min nTPM: 960.1
Sample A
1086.6
Sample B
981.6
Sample C
960.1
Sample D
996.9
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The Human Protein Atlas project is funded
