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  • UBL5
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:653.1 nTPM
HPA Brain:150.1 nTPM
GTEx:653.1 nTPM
FANTOM5:118.5 Scaled Tags Per Million
Pig:324.5 nTPM
Mouse:490.0 nTPM
Allen mouse:5.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.1
Sample id Sample description nTPM
Amygdala
nTPM: 150.1
2514 Male, age 75, right hemisphere 187.1
1987 Female, age 91, left hemisphere 155.9
2814 Male, age 76, right hemisphere 152.8
2517 Female, age 94, left hemisphere 128.2
2695 Female, age 67, right hemisphere 126.6
Basal amygdala
nTPM: 108.0
2609 Male, age 75, right hemisphere 138.3
2110 Male, age 80, left hemisphere 125.1
1955 Male, age 76, both hemispheres 115.1
2243 Female, age 91, right hemisphere 111.5
2685 Female, age 94, left hemisphere 93.9
2827 Female, age 67, right hemisphere 64.3
Central amygdala
nTPM: 119.7
1905 Male, age 76, both hemispheres 146.7
2515 Male, age 75, right hemisphere 128.3
2826 Female, age 94, left hemisphere 126.7
2239 Male, age 80, left hemisphere 109.3
2701 Female, age 91, right hemisphere 87.4
Corticomedial amygdala
nTPM: 123.8
2428 Male, age 75, right hemisphere 145.5
2829 Male, age 80, left hemisphere 139.3
2429 Female, age 94, left hemisphere 134.0
2242 Female, age 91, right hemisphere 131.5
2240 Male, age 76, both hemispheres 115.0
2535 Female, age 67, right hemisphere 77.5
Lateral amygdala
nTPM: 107.0
2516 Male, age 75, right hemisphere 145.6
1883 Male, age 76, both hemispheres 135.4
2534 Female, age 94, left hemisphere 127.5
2255 Female, age 91, right hemisphere 84.9
2256 Male, age 80, left hemisphere 82.8
2830 Female, age 67, right hemisphere 65.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

653.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 653.1
Samples: 181

Max nTPM: 2078.8
Min nTPM: 333.6
Std nTPM: 262.5
Median nTPM: 589.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2078.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1910.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1766.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1738.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1445.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1325.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1174.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1147.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1083.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1081.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1057.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 998.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 982.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 932.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 928.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 927.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 910.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 900.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 889.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 882.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 879.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 875.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 871.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 868.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 865.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 863.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 862.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 854.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 845.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 844.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 828.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 821.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 811.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 807.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 798.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 768.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 767.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 767.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 758.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 745.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 740.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 735.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 732.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 732.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 731.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 727.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 726.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 714.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 713.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 712.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 711.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 709.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 700.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 698.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 697.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 691.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 674.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 673.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 671.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 671.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 669.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 661.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 661.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 659.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 657.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 656.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 648.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 647.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 646.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 645.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 638.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 635.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 634.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 627.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 627.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 626.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 626.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 625.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 622.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 613.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 612.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 612.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 611.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 607.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 605.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 602.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 601.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 597.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 594.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 590.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 589.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 586.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 585.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 581.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 578.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 577.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 577.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 574.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 572.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 572.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 570.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 567.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 566.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 564.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 562.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 561.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 560.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 559.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 558.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 557.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 553.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 551.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 546.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 546.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 546.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 543.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 543.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 542.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 542.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 541.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 533.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 533.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 531.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 530.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 529.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 526.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 525.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 525.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 523.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 515.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 511.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 509.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 506.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 502.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 502.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 501.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 493.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 492.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 484.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 482.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 481.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 481.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 478.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 477.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 476.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 474.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 472.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 465.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 464.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 463.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 458.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 452.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 451.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 451.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 447.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 445.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 443.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 442.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 437.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 437.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 430.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 429.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 429.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 428.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 425.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 419.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 418.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 414.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 407.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 396.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 395.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 389.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 380.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 376.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 364.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 359.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 346.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 342.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 339.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 336.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 333.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

118.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 118.5
FF:10151-102I7 76 years, female 118.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

324.5
Pig sample Sample description nTPM
Amygdala
nTPM: 324.5
Samples: 4

Max nTPM: 469.7
Min nTPM: 239.7
Sample A Female 469.7
Sample B Female 330.9
Sample C Male 257.6
Sample D Male 239.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

490.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 490.0
Samples: 4

Max nTPM: 510.7
Min nTPM: 477.3
Sample A Male 477.3
Sample B Male 510.7
Sample C Female 488.5
Sample D Female 483.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.5
68744600 Antisense, RP_050208_01_C02, Mouse strain C57BL/6J (56 days, male) 5.5

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