MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:557.5 nTPM
HPA Brain:156.2 nTPM
GTEx:557.5 nTPM
FANTOM5:122.5 Scaled Tags Per Million
Pig:450.2 nTPM
Mouse:474.9 nTPM
Allen mouse:3.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 156.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.3
1870 Female, age 42, unknown 143.3
1827 Male, age 72, unknown 139.2
2411 Female, age 72, unknown 133.8
2019 Male, age 18, unknown 121.2
2828 Female, age 72, unknown 117.3
2219 Male, age 76, both hemispheres 112.0
1833 Male, age 53, unknown 104.5
2586 Male, age 75, left hemisphere 101.0
1830 Male, age 51, unknown 99.0
2666 Male, age 74, left hemisphere 91.5
Dorsal raphe nucleus
nTPM: 156.2
2298 Female, age 72, unknown 237.3
2750 Male, age 76, both hemispheres 146.9
2047 Male, age 72, unknown 142.9
1828 Male, age 53, unknown 133.0
2016 Female, age 72, unknown 121.0
Inferior colliculus
nTPM: 130.0
2097 Female, age 72, unknown 171.3
1890 Male, age 53, unknown 132.1
1848 Female, age 42, unknown 123.2
2849 Male, age 72, unknown 93.3
Median raphe nucleus
nTPM: 146.4
2220 Male, age 76, midline 146.4
Periaquaductal grey, anterior
nTPM: 139.4
1947 Male, age 18, unknown 148.8
1795 Male, age 51, unknown 140.2
2502 Female, age 75, unknown 129.3
Periaquaductal grey, dorsal
nTPM: 124.4
1840 Male, age 53, unknown 145.3
2850 Male, age 76, both hemispheres 130.6
1831 Male, age 72, unknown 118.0
2464 Female, age 72, unknown 103.6
Periaquaductal grey, lateral
nTPM: 124.9
2053 Male, age 18, unknown 130.5
2272 Male, age 74, both hemispheres 122.9
2140 Male, age 76, both hemispheres 121.5
Pretectal area
nTPM: 147.0
2224 Female, age 72, unknown 180.9
1816 Male, age 51, unknown 162.8
1944 Female, age 72, unknown 158.5
2007 Male, age 72, unknown 156.9
2273 Male, age 74, both hemispheres 155.8
1817 Female, age 42, unknown 151.5
2667 Female, age 75, unknown 150.2
1815 Male, age 53, unknown 148.2
2316 Male, age 76, right hemisphere 128.5
2825 Male, age 18, unknown 122.8
2407 Male, age 75, both hemispheres 100.5
Red nucleus
nTPM: 129.6
1821 Female, age 72, unknown 179.8
2503 Female, age 72, unknown 146.9
2725 Female, age 75, unknown 141.4
1865 Male, age 51, unknown 137.6
1904 Male, age 53, unknown 130.7
2785 Male, age 18, unknown 129.5
1954 Female, age 42, unknown 128.7
2227 Male, age 72, unknown 127.3
2769 Male, age 72, unknown 126.9
2823 Male, age 76, right hemisphere 126.4
2584 Male, age 75, left hemisphere 89.9
2588 Male, age 74, left hemisphere 89.9
Substantia nigra
nTPM: 143.1
1916 Female, age 42, unknown 193.7
2241 Male, age 72, unknown 174.6
1851 Male, age 51, unknown 171.6
1889 Female, age 72, unknown 166.0
1941 Male, age 53, unknown 149.6
2409 Female, age 72, unknown 136.7
2699 Male, age 18, unknown 127.3
2665 Male, age 74, both hemispheres 111.3
2590 Female, age 75, unknown 109.0
2583 Male, age 75, right hemisphere 91.6
Superior colliculus
nTPM: 131.0
2668 Female, age 75, unknown 156.5
2261 Male, age 18, unknown 141.1
1796 Male, age 53, unknown 140.6
2587 Male, age 74, left hemisphere 138.7
1895 Male, age 76, right hemisphere 135.4
1913 Female, age 42, unknown 133.4
2087 Female, age 72, unknown 130.1
1995 Male, age 72, unknown 120.9
1839 Male, age 51, unknown 107.4
2664 Male, age 75, both hemispheres 106.0
Ventral tegmental area
nTPM: 144.4
1915 Female, age 42, unknown 175.0
2218 Male, age 76, both hemispheres 150.1
2223 Female, age 72, unknown 147.4
2410 Female, age 72, unknown 137.5
1942 Male, age 51, unknown 134.7
2021 Male, age 53, unknown 121.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 557.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 557.5
Samples: 183

Max nTPM: 1243.0
Min nTPM: 339.3
Std nTPM: 134.4
Median nTPM: 529.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1243.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 965.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 945.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 944.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 941.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 872.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 865.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 862.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 831.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 820.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 802.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 122.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 122.5
FF:10158-103A5 76 years, female 122.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 450.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 436.4
Samples: 4

Max nTPM: 583.1
Min nTPM: 312.8
Sample A Female 583.1
Sample B Female 365.6
Sample C Male 483.9
Sample D Male 312.8
Midbrain
nTPM: 446.4
Samples: 4

Max nTPM: 481.6
Min nTPM: 393.4
Sample A Female 481.6
Sample B Female 460.4
Sample C Male 450.0
Sample D Male 393.4
Periaqueductal gray
nTPM: 410.1
Samples: 3

Max nTPM: 498.2
Min nTPM: 353.3
Sample B Female 353.3
Sample C Male 498.2
Sample D Male 378.9
Superior colliculi
nTPM: 450.3
Samples: 4

Max nTPM: 605.2
Min nTPM: 259.1
Sample A Female 605.2
Sample B Female 259.1
Sample C Male 523.4
Sample D Male 413.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 474.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 474.9
Samples: 4

Max nTPM: 505.6
Min nTPM: 443.5
Sample A Male 505.6
Sample B Male 446.4
Sample C Female 443.5
Sample D Female 504.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
68744600 Antisense, RP_050208_01_C02, Mouse strain C57BL/6J (56 days, male) 3.0

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